myRT

myRT report for GCA_001636965.1_ASM163696v1

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Seq: JRTU01000027.1 Paraburkholderia kirstenboschensis strain Rau 2D2 Rau2D2_Contig00027, whole genome shotgun sequence (36052 bp)
Overview 1 RT 1: 15924-22379 bp Neighborhood of RT #1 [15924, 22486] Acetyltransf_10 RVT-UG8 PrpB MFS_SV2_like Feature: gene Location: 15924-16484 bp Feature: domain Description: Acetyltransf_10 Location: 16170-16464 bp Feature: domain Description: Acetyltransf_1 0 Location: 1 61 70-1 6464 bp Feature: gene Location: 16737-16871 bp Feature: gene Location: 17336-19324 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 17843-18281 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 7843-1 8281 bp Feature: gene Location: 21031-21909 bp Feature: domain Description: PrpB Location: 21046-21880 bp Feature: domain Description: PrpB Location: 21 046-21 880 bp Feature: gene Location: 21941-22486 bp Feature: domain Description: MFS_SV2_like Location: 21953-22379 bp Feature: domain Description: MFS_SV2_like Location: 21 953-22379 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_10 (pfam13673), RVT-UG8, PrpB (COG2513), MFS_SV2_like (cd17316)

Seq: JRTU01000089.1 Paraburkholderia kirstenboschensis strain Rau 2D2 Rau2D2_Contig00089, whole genome shotgun sequence (21966 bp)
Overview 1 RT 1: 4717-10969 bp Neighborhood of RT #1 [4717, 11004] IS5 GIIM RVT-GII GIIM PinE Zn_ribbon_recom HTH_17 RVT-GII HTH_Tnp_1 Feature: gene Location: 4717-5523 bp Feature: domain Description: IS5 Location: 4891-5458 bp Feature: domain Description: IS5 Location: 4891-5458 bp Feature: gene Location: 5806-6060 bp Feature: domain Description: GIIM Note: maturase Location: 5815-5974 bp Feature: domain Description: GIIM Note: maturase Location: 5815-5974 bp Feature: gene Location: 6227-7021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6230-6635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 30-6635 bp Feature: domain Description: GIIM Note: maturase Location: 6716-6947 bp Feature: domain Description: GIIM Note: maturase Location: 6716-6947 bp Feature: gene Location: 7364-7528 bp Feature: gene Location: 7521-9629 bp Feature: domain Description: PinE Location: 7572-8157 bp Feature: domain Description: PinE Location: 7572 -8157 bp Feature: domain Description: Zn_ribbon_recom Location: 8517-8685 bp Feature: domain Description: Zn_ribbon_recom Location: 8517-8685 bp Feature: domain Description: HTH_17 Location: 9396-9519 bp Feature: domain Description: HTH_17 Location: 9396-9519 bp Feature: gene Location: 9748-10194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9952-10186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9952 -10186 bp Feature: gene Location: 10423-10569 bp Feature: gene Location: 10744-11004 bp Feature: domain Description: HTH_Tnp_1 Location: 10780-10969 bp Feature: domain Description: HTH_Tnp_1 Location: 10780-10969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), GIIM (pfam08388), RVT-GII, PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728), HTH_Tnp_1 (pfam01527)

Seq: JRTU01000171.1 Paraburkholderia kirstenboschensis strain Rau 2D2 Rau2D2_Contig00171, whole genome shotgun sequence (14658 bp)
Overview 1 RT 1: 5140-10647 bp Neighborhood of RT #1 [5140, 10679] PssA PRK05305 RVT_N RVT-GII GIIM HNHc PRK05479 Feature: gene Location: 5140-6009 bp Feature: domain Description: PssA Location: 5272-5953 bp Feature: domain Description: PssA Location: 5272-5953 bp Feature: gene Location: 6034-6672 bp Feature: domain Description: PRK05305 Location: 6058-6667 bp Feature: domain Description: PRK053 05 Location: 6058-6667 bp Feature: gene Location: 6790-8391 bp Feature: domain Description: RVT_N Location: 6793-6991 bp Feature: domain Description: RVT_N Location: 6793 -6991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7036-7684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 703 6-7684 bp Feature: domain Description: GIIM Note: maturase Location: 7735-7969 bp Feature: domain Description: GIIM Note: maturase Location: 773 5-7969 bp Feature: domain Description: HNHc Note: nucleases Location: 8212-8353 bp Feature: domain Description: HNHc Note: nucleases Location: 8212-83 53 bp Feature: gene Location: 8934-9242 bp Feature: gene Location: 9663-10679 bp Feature: domain Description: PRK05479 Location: 9666-10647 bp Feature: domain Description: PRK05479 Location: 9666-10647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PssA (COG1183), PRK05305 (phosphatidylserine decarboxylase family protein), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05479 (ketol-acid reductoisomerase; Provisional)

Seq: JRTU01000281.1 Paraburkholderia kirstenboschensis strain Rau 2D2 Rau2D2_Contig00281, whole genome shotgun sequence (10596 bp)
Overview 1 RT 1: 3216-10118 bp Neighborhood of RT #1 [3216, 10118] YjgR YjgR RVT-UG12 RVT-UG12 Feature: gene Location: 3216-5330 bp Feature: domain Description: YjgR Location: 3720-3897 bp Feature: domain Description: YjgR Location: 3720-3897 bp Feature: domain Description: YjgR Location: 4695-5169 bp Feature: domain Description: YjgR Location: 4 695-5169 bp Feature: gene Location: 5378-6388 bp Feature: gene Location: 6739-7200 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 7072-7198 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 7072-7198 bp Feature: gene Location: 7179-8360 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 7185-7521 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 7185-7521 bp Feature: gene Location: 8627-9427 bp Feature: gene Location: 9984-10118 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjgR (COG0433), RVT-UG12

Seq: JRTU01000295.1 Paraburkholderia kirstenboschensis strain Rau 2D2 Rau2D2_Contig00295, whole genome shotgun sequence (10000 bp)
Overview 1 RT 1: 4224-9938 bp Neighborhood of RT #1 [4224, 10000] RVT_N RVT-GII GIIM HNHc PRK12904 Feature: gene Location: 4224-4442 bp Feature: gene Location: 4567-4764 bp Feature: gene Location: 5410-7110 bp Feature: domain Description: RVT_N Location: 5467-5710 bp Feature: domain Description: RVT_N Location: 5 467-5 710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5755-6403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 75 5 -6403 bp Feature: domain Description: GIIM Note: maturase Location: 6457-6688 bp Feature: domain Description: GIIM Note: maturase Location: 645 7-6688 bp Feature: domain Description: HNHc Note: nucleases Location: 6904-7072 bp Feature: domain Description: HNHc Note: nucleases Location: 6904-7072 bp Feature: gene Location: 7262-10000 bp Feature: domain Description: PRK12904 Location: 7325-9938 bp Feature: domain Description: PRK12904 Location: 7325 -9938 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK12904 (preprotein translocase subunit SecA; Reviewed)

Seq: JRTU01000322.1 Paraburkholderia kirstenboschensis strain Rau 2D2 Rau2D2_Contig00322, whole genome shotgun sequence (9441 bp)
Overview 1 RT 1: 7416-9434 bp Neighborhood of RT #1 [7416, 9439] OmpR RVT-GII GIIM InsE Feature: gene Location: 7416-7682 bp Feature: domain Description: OmpR Location: 7425-7629 bp Feature: domain Description: OmpR Location: 7425-76 29 bp Feature: gene Location: 7749-7940 bp Feature: gene Location: 8020-9279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8179-8662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8179-86 6 2 bp Feature: domain Description: GIIM Note: maturase Location: 8740-8962 bp Feature: domain Description: GIIM Note: maturase Location: 8740-896 2 bp Feature: gene Location: 9266-9439 bp Feature: domain Description: InsE Location: 9275-9434 bp Feature: domain Description: InsE Location: 9275-9434 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: JRTU01000861.1 Paraburkholderia kirstenboschensis strain Rau 2D2 Rau2D2_Contig00861, whole genome shotgun sequence (1929 bp)
Overview 1 RT 1: 2-1529 bp Neighborhood of RT #1 [2, 1529] RVT-GII Feature: gene Location: 2-1144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38-680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38-680 bp Feature: gene Location: 1068-1529 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JRTU01000995.1 Paraburkholderia kirstenboschensis strain Rau 2D2 Rau2D2_Contig00995, whole genome shotgun sequence (1161 bp)
Overview 1 RT 1: 2-1160 bp Neighborhood of RT #1 [2, 1160] RVT-GII Feature: gene Location: 2-994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206-863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206-8 63 bp Feature: gene Location: 996-1160 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JRTU01001047.1 Paraburkholderia kirstenboschensis strain Rau 2D2 Rau2D2_Contig01047, whole genome shotgun sequence (957 bp)
Overview 1 RT 1: 2-821 bp Neighborhood of RT #1 [2, 955] RVT-GII Feature: gene Location: 2-955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128-821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128-821 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JRTU01001107.1 Paraburkholderia kirstenboschensis strain Rau 2D2 Rau2D2_Contig01106, whole genome shotgun sequence (710 bp)
Overview 1 RT 1: 196-688 bp Neighborhood of RT #1 [196, 708] RVT-GII GIIM Feature: gene Location: 196-708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199-472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199-472 bp Feature: domain Description: GIIM Note: maturase Location: 550-688 bp Feature: domain Description: GIIM Note: maturase Location: 550-688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JRTU01001144.1 Paraburkholderia kirstenboschensis strain Rau 2D2 Rau2D2_Contig01144, whole genome shotgun sequence (598 bp)
Overview 1 RT 1: 177-579 bp Neighborhood of RT #1 [177, 596] RVT-GII Feature: gene Location: 177-596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 396-579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 396-579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII