myRT

myRT report for GCA_001636975.1_ASM163697v1

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Seq: JRZC01000004.1 Paraburkholderia kirstenboschensis strain KB15 KB15_contig00004, whole genome shotgun sequence (68407 bp)
Overview 1 RT 1: 22162-31145 bp Neighborhood of RT #1 [22162, 31159] VgrG DUF2345 HNH_2 RVT-Retrons RVT-Retrons GlxA GyrI-like 2A0305 Feature: gene Location: 22162-24870 bp Feature: domain Description: VgrG Location: 22195-24013 bp Feature: domain Description: VgrG Location: 221 95-2401 3 bp Feature: domain Description: DUF2345 Location: 24190-24637 bp Feature: domain Description: DUF2345 Location: 241 90-24637 bp Feature: gene Location: 26198-26464 bp Feature: domain Description: HNH_2 Location: 26282-26423 bp Feature: domain Description: HNH_2 Location: 26282-26423 bp Feature: gene Location: 26638-27078 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 26641-26839 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 26641 -26839 bp Feature: gene Location: 27234-27977 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27702-27912 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27702-2791 2 bp Feature: gene Location: 28623-29525 bp Feature: domain Description: GlxA Location: 28677-29004 bp Feature: domain Description: GlxA Location: 28677-29004 bp Feature: domain Description: GyrI-like Location: 29055-29520 bp Feature: domain Description: GyrI-like Location: 29055-29520 bp Feature: gene Location: 29756-31159 bp Feature: domain Description: 2A0305 Location: 29801-31145 bp Feature: domain Description: 2A0305 Location: 29801 -31 1 45 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VgrG (COG3501), DUF2345 (pfam10106), HNH_2 (pfam13391), RVT-Retrons, GlxA (COG4977), GyrI-like (pfam06445), 2A0305 (TIGR00908)

Seq: JRZC01000130.1 Paraburkholderia kirstenboschensis strain KB15 KB15_contig00141, whole genome shotgun sequence (14206 bp)
Overview 1 RT 1: 3542-9016 bp Neighborhood of RT #1 [3542, 9072] PRK05479 RVT_N RVT-GII GIIM HNHc PRK05305 PssA Feature: gene Location: 3542-4558 bp Feature: domain Description: PRK05479 Location: 3545-4526 bp Feature: domain Description: PRK05479 Location: 3545-452 6 bp Feature: gene Location: 5008-5526 bp Feature: gene Location: 5825-7423 bp Feature: domain Description: RVT_N Location: 5828-6026 bp Feature: domain Description: RVT_N Location: 582 8-602 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6071-6719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6071-6719 bp Feature: domain Description: GIIM Note: maturase Location: 6773-7004 bp Feature: domain Description: GIIM Note: maturase Location: 6773-7004 bp Feature: domain Description: HNHc Note: nucleases Location: 7232-7385 bp Feature: domain Description: HNHc Note: nucleases Location: 72 32 -7385 bp Feature: gene Location: 7540-8178 bp Feature: domain Description: PRK05305 Location: 7564-8173 bp Feature: domain Description: PRK05305 Location: 7564-8173 bp Feature: gene Location: 8203-9072 bp Feature: domain Description: PssA Location: 8335-9016 bp Feature: domain Description: PssA Location: 8335-9016 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05479 (ketol-acid reductoisomerase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05305 (phosphatidylserine decarboxylase family protein), PssA (COG1183)

Seq: JRZC01000310.1 Paraburkholderia kirstenboschensis strain KB15 KB15_contig00330, whole genome shotgun sequence (48706 bp)
Overview 1 RT 1: 31125-35114 bp Neighborhood of RT #1 [31125, 35114] RVT-UG16 Feature: gene Location: 31125-31892 bp Feature: gene Location: 32499-32696 bp Feature: gene Location: 33049-34170 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 33409-33814 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 3 3 409-3 3 814 bp Feature: gene Location: 34244-34525 bp Feature: gene Location: 34911-35114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG16

Seq: JRZC01000393.1 Paraburkholderia kirstenboschensis strain KB15 KB15_contig00420, whole genome shotgun sequence (11575 bp)
Overview 1 RT 1: 6595-9737 bp Neighborhood of RT #1 [6595, 9737] RVT-Retrons HipB Feature: gene Location: 6595-7365 bp Feature: gene Location: 7398-7820 bp Feature: gene Location: 8142-9173 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8286-8844 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8286-884 4 bp Feature: gene Location: 9151-9453 bp Feature: domain Description: HipB Location: 9160-9406 bp Feature: domain Description: HipB Location: 9160-94 06 bp Feature: gene Location: 9495-9737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HipB (COG1396)

Seq: JRZC01000445.1 Paraburkholderia kirstenboschensis strain KB15 KB15_contig00477, whole genome shotgun sequence (20224 bp)
Overview 1 RT 1: 5876-14640 bp Neighborhood of RT #1 [5876, 14672] argJ PRK12904 RVT_N RVT-GII GIIM HNHc DciA LpxC Feature: gene Location: 5876-7090 bp Feature: domain Description: argJ Location: 5915-7010 bp Feature: domain Description: argJ Location: 5 915 -7010 bp Feature: gene Location: 7255-10116 bp Feature: domain Description: PRK12904 Location: 7318-10108 bp Feature: domain Description: PRK12904 Location: 7318-10108 bp Feature: gene Location: 10267-11967 bp Feature: domain Description: RVT_N Location: 10324-10567 bp Feature: domain Description: RVT_N Location: 10324-105 67 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10612-11260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10612-11260 bp Feature: domain Description: GIIM Note: maturase Location: 11314-11545 bp Feature: domain Description: GIIM Note: maturase Location: 11314-115 45 bp Feature: domain Description: HNHc Note: nucleases Location: 11761-11929 bp Feature: domain Description: HNHc Note: nucleases Location: 11761-11929 bp Feature: gene Location: 13185-13670 bp Feature: domain Description: DciA Location: 13254-13509 bp Feature: domain Description: DciA Location: 1325 4-135 09 bp Feature: gene Location: 13755-14672 bp Feature: domain Description: LpxC Location: 13758-14640 bp Feature: domain Description: LpxC Location: 1375 8-14640 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT argJ (PRK05388), PRK12904 (preprotein translocase subunit SecA; Reviewed), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DciA, LpxC (pfam03331)

Seq: JRZC01000682.1 Paraburkholderia kirstenboschensis strain KB15 KB15_contig00729, whole genome shotgun sequence (128110 bp)
Overview 1 RT 1: 68382-71239 bp Neighborhood of RT #1 [68382, 71250] NADAR RVT-GII GIIM DUF1768 Feature: gene Location: 68382-68522 bp Feature: domain Description: NADAR Location: 68412-68511 bp Feature: domain Description: NADAR Location: 6 8412-6 8511 bp Feature: gene Location: 68536-68820 bp Feature: gene Location: 69500-69898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69503-69818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 9503-6 9818 bp Feature: gene Location: 70130-70513 bp Feature: domain Description: GIIM Note: maturase Location: 70133-70367 bp Feature: domain Description: GIIM Note: maturase Location: 70133-7036 7 bp Feature: gene Location: 70663-71250 bp Feature: domain Description: DUF1768 Location: 70891-71239 bp Feature: domain Description: DUF176 8 Location: 70891-71239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NADAR (cl21532), RVT-GII, GIIM (pfam08388), DUF1768 (pfam08719)

Seq: JRZC01000824.1 Paraburkholderia kirstenboschensis strain KB15 KB15_contig00875, whole genome shotgun sequence (9879 bp)
Overview 1 RT 1: 2-1631 bp Neighborhood of RT #1 [2, 1631] RVT-GII GIIM Feature: gene Location: 2-664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-284 bp Feature: domain Description: GIIM Note: maturase Location: 359-578 bp Feature: domain Description: GIIM Note: maturase Location: 359-57 8 bp Feature: gene Location: 869-1096 bp Feature: gene Location: 1326-1631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JRZC01000828.1 Paraburkholderia kirstenboschensis strain KB15 KB15_contig00879, whole genome shotgun sequence (9487 bp)
Overview 1 RT 1: 56-3604 bp Neighborhood of RT #1 [56, 3645] RVT-GII GIIM COG4191 Feature: gene Location: 56-214 bp Feature: gene Location: 438-1628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 609-1272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 609-1272 bp Feature: domain Description: GIIM Note: maturase Location: 1341-1557 bp Feature: domain Description: GIIM Note: maturase Location: 1341-1557 bp Feature: gene Location: 1939-2112 bp Feature: gene Location: 2359-3645 bp Feature: domain Description: COG4191 Location: 2923-3604 bp Feature: domain Description: COG4191 Location: 2923-3604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG4191 (Signal transduction histidine kinase regulating C4-dicarboxylate transport system )

Seq: JRZC01000913.1 Paraburkholderia kirstenboschensis strain KB15 KB15_contig00964, whole genome shotgun sequence (1921 bp)
Overview 1 RT 1: 60-1488 bp Neighborhood of RT #1 [60, 1883] RVT-GII Feature: gene Location: 60-1883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 798-1488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79 8-1488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JRZC01000932.1 Paraburkholderia kirstenboschensis strain KB15 KB15_contig00983, whole genome shotgun sequence (1193 bp)
Overview 1 RT 1: 45-1116 bp Neighborhood of RT #1 [45, 1116] RVT-GII GIIM Feature: gene Location: 45-665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60-285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60-285 bp Feature: domain Description: GIIM Note: maturase Location: 360-579 bp Feature: domain Description: GIIM Note: maturase Location: 360-579 bp Feature: gene Location: 955-1116 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JRZC01000940.1 Paraburkholderia kirstenboschensis strain KB15 KB15_contig00991, whole genome shotgun sequence (1052 bp)
Overview 1 RT 1: 2-1031 bp Neighborhood of RT #1 [2, 1051] RVT-GII Feature: gene Location: 2-1051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344-1031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344-1031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JRZC01000964.1 Paraburkholderia kirstenboschensis strain KB15 KB15_contig01015, whole genome shotgun sequence (756 bp)
Overview 1 RT 1: 1-589 bp Neighborhood of RT #1 [1, 657] RVT-GII Feature: gene Location: 1-657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 304-589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 304-589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII