myRT

myRT report for GCA_001637705.1_ASM163770v1

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Seq: JYKB01000108.1 Escherichia coli strain RiKo 2299/09 RIKO2299_108c, whole genome shotgun sequence (13823 bp)
Overview 1 RT 1: 734-3339 bp Neighborhood of RT #1 [734, 3392] RVT-GII GIIM PHA02517 autotrans_barl Feature: gene Location: 734-2257 bp Ori: OAB99012.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007-1739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 007-1 739 bp Feature: domain Description: GIIM Note: maturase Location: 1814-2012 bp Feature: domain Description: GIIM Note: maturase Location: 1 81 4-201 2 bp Feature: gene Location: 2374-2820 bp Ori: OAB99013.1 Feature: domain Description: PHA02517 Location: 2377-2818 bp Feature: domain Description: PHA0251 7 Location: 2377-281 8 bp Feature: gene Location: 2823-3392 bp Ori: OAB99014.1 Feature: domain Description: autotrans_barl Location: 2904-3339 bp Feature: domain Description: autotrans_barl Location: 2904-3339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), autotrans_barl (TIGR01414)

Seq: JYKB01000012.1 Escherichia coli strain RiKo 2299/09 RIKO2299_12c, whole genome shotgun sequence (262707 bp)
Overview 1 RT 1: 9789-18157 bp Neighborhood of RT #1 [9789, 18177] PRK09692 RVT-UG3 RVT-UG8 PRK09678 Psu Feature: gene Location: 9789-11603 bp Feature: gene Location: 12517-13695 bp Ori: OAC06727.1 Feature: domain Description: PRK09692 Location: 12523-13681 bp Feature: domain Description: PRK09692 Location: 12 52 3-13681 bp Feature: gene Location: 13697-14893 bp Ori: OAC06728.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 13982-14444 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 13982 -14444 bp Feature: gene Location: 14897-16900 bp Ori: OAC06729.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 15392-15839 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 15392 -15839 bp Feature: gene Location: 17349-17621 bp Ori: OAC06730.1 Feature: domain Description: PRK09678 Location: 17358-17526 bp Feature: domain Description: PRK09678 Location: 17358-1752 6 bp Feature: gene Location: 17623-18177 bp Ori: OAC06731.1 Gene: psu_1 Feature: domain Description: Psu Location: 17647-18157 bp Feature: domain Description: Psu Location: 17647-18157 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG3, RVT-UG8, PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455)

Seq: JYKB01000052.1 Escherichia coli strain RiKo 2299/09 RIKO2299_52c, whole genome shotgun sequence (213194 bp)
Overview 1 RT 1: 69916-73680 bp Neighborhood of RT #1 [69916, 73680] Q RVT-Retrons HTH_XRE Feature: gene Location: 69916-70950 bp Ori: OAC03264.1 Feature: domain Description: Q Location: 69919-70942 bp Feature: domain Description: Q Location: 69919-70942 bp Feature: gene Location: 71286-72086 bp Feature: gene Location: 72252-73202 bp Ori: OAC03266.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 72432-72969 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7243 2-72969 bp Feature: gene Location: 73186-73488 bp Ori: OAC03267.1 Feature: domain Description: HTH_XRE Location: 73198-73360 bp Feature: domain Description: HTH_XRE Location: 73 198-73 3 60 bp Feature: gene Location: 73525-73680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), RVT-Retrons, HTH_XRE (smart00530)

Seq: JYKB01000120.1 Escherichia coli strain RiKo 2299/09 RIKO2299_120c, whole genome shotgun sequence (5822 bp)
Overview 1 RT 1: 1717-4471 bp Neighborhood of RT #1 [1717, 4566] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1717-1950 bp Ori: OAB98739.1 Feature: domain Description: DUF905 Location: 1747-1945 bp Feature: domain Description: DUF905 Location: 174 7-194 5 bp Feature: gene Location: 2018-2470 bp Ori: OAB98740.1 Gene: ssb_2 Feature: domain Description: PRK13732 Location: 2021-2468 bp Feature: domain Description: PRK13732 Location: 2021-24 68 bp Feature: gene Location: 2665-4566 bp Ori: OAB98741.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2932-3763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2932-3763 bp Feature: domain Description: Intron_maturas2 Location: 3877-4135 bp Feature: domain Description: Intron_maturas2 Location: 3877-4 135 bp Feature: domain Description: HNHc Note: nucleases Location: 4309-4471 bp Feature: domain Description: HNHc Note: nucleases Location: 4 309-4 4 71 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)