myRT

myRT report for GCA_001637785.1_ASM163778v1

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Seq: LAUC01000062.1 Escherichia coli strain RiKo 2351/09 RIKO2351_62c, whole genome shotgun sequence (57588 bp)
Overview 1 RT 1: 14270-22234 bp Neighborhood of RT #1 [14270, 22347] DUF932 RVT-Retrons autotrans_barl AIDA AIDA AIDA AIDA AIDA AIDA AIDA AIDA AIDA AIDA AIDA AIDA AIDA Feature: gene Location: 14270-14977 bp Feature: gene Location: 15652-16473 bp Ori: OAC30210.1 Feature: domain Description: DUF932 Location: 15763-16438 bp Feature: domain Description: DUF932 Location: 1 5763-1 6438 bp Feature: gene Location: 16724-18448 bp Ori: OAC30211.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16862-17486 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 6862-1 7486 bp Feature: gene Location: 19092-19418 bp Ori: OAC30212.1 Feature: domain Description: autotrans_barl Location: 19113-19416 bp Feature: domain Description: autotrans_barl Location: 1 91 1 3-1 941 6 bp Feature: gene Location: 19447-22347 bp Ori: OAC30213.1 Feature: domain Description: AIDA Location: 19585-19696 bp Feature: domain Description: AIDA Location: 1 9585-1 9696 bp Feature: domain Description: AIDA Location: 19813-19912 bp Feature: domain Description: AIDA Location: 1 981 3-1 991 2 bp Feature: domain Description: AIDA Location: 19942-20086 bp Feature: domain Description: AIDA Location: 1 9942-20086 bp Feature: domain Description: AIDA Location: 20131-20251 bp Feature: domain Description: AIDA Location: 201 31 -20251 bp Feature: domain Description: AIDA Location: 20341-20521 bp Feature: domain Description: AIDA Location: 20341 -20521 bp Feature: domain Description: AIDA Location: 20632-20785 bp Feature: domain Description: AIDA Location: 20632-20785 bp Feature: domain Description: AIDA Location: 20833-21019 bp Feature: domain Description: AIDA Location: 20833-21 01 9 bp Feature: domain Description: AIDA Location: 21115-21298 bp Feature: domain Description: AIDA Location: 21 1 1 5-21 298 bp Feature: domain Description: AIDA Location: 21406-21502 bp Feature: domain Description: AIDA Location: 21 406-21 502 bp Feature: domain Description: AIDA Location: 21550-21673 bp Feature: domain Description: AIDA Location: 21 550-21 673 bp Feature: domain Description: AIDA Location: 21709-21895 bp Feature: domain Description: AIDA Location: 21 709-21 895 bp Feature: domain Description: AIDA Location: 21904-22057 bp Feature: domain Description: AIDA Location: 21 904-22057 bp Feature: domain Description: AIDA Location: 22099-22234 bp Feature: domain Description: AIDA Location: 22099-22234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-Retrons, autotrans_barl (TIGR01414), AIDA (pfam16168)

Seq: LAUC01000034.1 Escherichia coli strain RiKo 2351/09 RIKO2351_34c, whole genome shotgun sequence (78991 bp)
Overview 1 RT 1: 39757-47252 bp Neighborhood of RT #1 [39757, 47266] Phage_GPA RVT-AbiP2 Q P Feature: gene Location: 39757-42033 bp Ori: OAC32911.1 Feature: domain Description: Phage_GPA Location: 40156-41143 bp Feature: domain Description: Phage_GPA Location: 40156-41143 bp Feature: gene Location: 42137-42355 bp Feature: gene Location: 42676-44064 bp Ori: OAC32913.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 43093-43546 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 43093-43546 bp Feature: gene Location: 44460-45494 bp Ori: OAC32914.1 Feature: domain Description: Q Location: 44463-45489 bp Feature: domain Description: Q Location: 44463-45489 bp Feature: gene Location: 45494-47266 bp Ori: OAC32915.1 Feature: domain Description: P Location: 45521-47252 bp Feature: domain Description: P Location: 4552 1-472 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-AbiP2, Q (PHA02536), P (PHA02535)

Seq: LAUC01000100.1 Escherichia coli strain RiKo 2351/09 RIKO2351_100c, whole genome shotgun sequence (9011 bp)
Overview 1 RT 1: 1215-4079 bp Neighborhood of RT #1 [1215, 4084] RVT-GII GIIM Peptidase_S6 Feature: gene Location: 1215-2738 bp Ori: OAC27778.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1488-2220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1488-2220 bp Feature: domain Description: GIIM Note: maturase Location: 2295-2493 bp Feature: domain Description: GIIM Note: maturase Location: 2295-2493 bp Feature: gene Location: 3183-3620 bp Feature: gene Location: 3611-4084 bp Ori: OAC27780.1 Gene: eatA Feature: domain Description: Peptidase_S6 Location: 3686-4079 bp Feature: domain Description: Peptidase_S6 Location: 3 686-4079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Peptidase_S6 (pfam02395)

Seq: LAUC01000076.1 Escherichia coli strain RiKo 2351/09 RIKO2351_76c, whole genome shotgun sequence (74771 bp)
Overview 1 RT 1: 48989-52871 bp Neighborhood of RT #1 [48989, 52876] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 48989-49447 bp Ori: OAC29178.1 Gene: dut Feature: domain Description: dut Location: 48995-49442 bp Feature: domain Description: dut Location: 4 8995-4 94 4 2 bp Feature: gene Location: 49554-50150 bp Ori: OAC29179.1 Gene: slmA Feature: domain Description: slmA Location: 49560-50136 bp Feature: domain Description: slmA Location: 4 9560-50136 bp Feature: gene Location: 50196-51155 bp Ori: OAC29180.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50331-50880 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50331-50880 bp Feature: gene Location: 51453-52094 bp Ori: OAC29181.1 Gene: pyrE Feature: domain Description: pyrE Location: 51456-52089 bp Feature: domain Description: pyrE Location: 514 56-52089 bp Feature: gene Location: 52160-52876 bp Ori: OAC29182.1 Gene: rph Feature: domain Description: rph Location: 52163-52871 bp Feature: domain Description: rph Location: 52163-52871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)