myRT

myRT report for GCA_001637895.1_ASM163789v1

Download annotations/find similar RTs

Seq: LSEG01000099.1 Escherichia coli strain J09 Contig_100, whole genome shotgun sequence (34513 bp)
Overview 1 RT 1: 1891-4303 bp Neighborhood of RT #1 [1891, 4377] PHA02517 InsE RVT-GII RVT-GII group_II_RT_mat IS285 Feature: gene Location: 1891-2592 bp Feature: domain Description: PHA02517 Location: 1909-2587 bp Feature: domain Description: PHA0251 7 Location: 1 909-2587 bp Feature: gene Location: 2733-3035 bp Feature: domain Description: InsE Location: 2736-3021 bp Feature: domain Description: InsE Location: 2736-3021 bp Feature: gene Location: 3074-3277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3119-3275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 9-3275 bp Feature: gene Location: 3311-3547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3314-3494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331 4-3494 bp Feature: gene Location: 3540-3752 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3543-3741 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3543-3741 bp Feature: gene Location: 3895-4377 bp Feature: domain Description: IS285 Location: 3925-4303 bp Feature: domain Description: IS285 Location: 3925-4303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)

Seq: LSEG01000103.1 Escherichia coli strain J09 Contig_104, whole genome shotgun sequence (206609 bp)
Overview 1 RT 1: 8699-12640 bp Neighborhood of RT #1 [8699, 12640] RVT-Retrons Feature: gene Location: 8699-8938 bp Feature: gene Location: 9245-9421 bp Feature: gene Location: 9494-11266 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9653-10271 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9653-102 71 bp Feature: gene Location: 11288-11455 bp Feature: gene Location: 11501-12640 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: LSEG01000034.1 Escherichia coli strain J09 Contig_35, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 0-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 173 7-193 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LSEG01000038.1 Escherichia coli strain J09 Contig_39, whole genome shotgun sequence (16351 bp)
Overview 1 RT 1: 2182-6182 bp Neighborhood of RT #1 [2182, 6190] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2182-3543 bp Feature: domain Description: DcuC Location: 2185-3517 bp Feature: domain Description: DcuC Location: 2185-3517 bp Feature: gene Location: 3596-3967 bp Feature: gene Location: 4189-4635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4495-4597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 95-4 597 bp Feature: gene Location: 4683-4832 bp Feature: gene Location: 5159-6190 bp Feature: domain Description: Asparaginase_2 Location: 5249-6182 bp Feature: domain Description: Asparaginase_2 Location: 524 9-6182 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)

Seq: LSEG01000068.1 Escherichia coli strain J09 Contig_69, whole genome shotgun sequence (14346 bp)
Overview 1 RT 1: 6952-12921 bp Neighborhood of RT #1 [6952, 12921] GerD RVT-UG1 YeeP Feature: gene Location: 6952-7386 bp Feature: domain Description: GerD Location: 7030-7144 bp Feature: domain Description: GerD Location: 7030-7144 bp Feature: gene Location: 7395-8504 bp Feature: gene Location: 8612-11083 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 9224-9734 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 9224-9734 bp Feature: gene Location: 11687-12559 bp Feature: domain Description: YeeP Location: 11690-12557 bp Feature: domain Description: YeeP Location: 11690-125 5 7 bp Feature: gene Location: 12736-12921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GerD (pfam17898), RVT-UG1, YeeP (COG3596)