myRT

myRT report for GCA_001638025.1_ASM163802v1

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Seq: LSEO01000108.1 Escherichia coli strain MB3298 Contig_109, whole genome shotgun sequence (254608 bp)
Overview 1 RT 1: 213137-217078 bp Neighborhood of RT #1 [213137, 217078] RVT-Retrons Feature: gene Location: 213137-214276 bp Feature: gene Location: 214322-214489 bp Feature: gene Location: 214511-216283 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 214670-215288 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 4670-21 5288 bp Feature: gene Location: 216504-216647 bp Feature: gene Location: 216839-217078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: LSEO01000124.1 Escherichia coli strain MB3298 Contig_125, whole genome shotgun sequence (209668 bp)
Overview 1 RT 1: 9031-12258 bp Neighborhood of RT #1 [9031, 12258] DUF4094 Peptidase_S74 RVT-UG17 SLATT_5 Feature: gene Location: 9031-9735 bp Feature: domain Description: DUF4094 Location: 9073-9163 bp Feature: domain Description: DUF4094 Location: 9073-9163 bp Feature: domain Description: Peptidase_S74 Location: 9379-9538 bp Feature: domain Description: Peptidase_S74 Location: 9379-9538 bp Feature: gene Location: 9746-10033 bp Feature: gene Location: 10141-11511 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 10369-10975 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 10369-10975 bp Feature: gene Location: 11498-12040 bp Feature: domain Description: SLATT_5 Location: 11504-12020 bp Feature: domain Description: SLATT_5 Location: 11504-12 02 0 bp Feature: gene Location: 12079-12258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4094 (pfam13334), Peptidase_S74 (pfam13884), RVT-UG17, SLATT_5 (pfam18160)

Seq: LSEO01000072.1 Escherichia coli strain MB3298 Contig_72, whole genome shotgun sequence (6992 bp)
Overview 1 RT 1: 3398-6990 bp Neighborhood of RT #1 [3398, 6990] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3398-3631 bp Feature: domain Description: DUF905 Location: 3428-3626 bp Feature: domain Description: DUF905 Location: 3 428-3 626 bp Feature: gene Location: 3694-4146 bp Feature: domain Description: PRK13732 Location: 3700-4144 bp Feature: domain Description: PRK13 73 2 Location: 3 700-4144 bp Feature: gene Location: 4341-6242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4608-5439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4608-543 9 bp Feature: domain Description: Intron_maturas2 Location: 5553-5811 bp Feature: domain Description: Intron_maturas2 Location: 5553 -5811 bp Feature: domain Description: HNHc Note: nucleases Location: 5985-6147 bp Feature: domain Description: HNHc Note: nucleases Location: 5985-6147 bp Feature: gene Location: 6805-6990 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)