myRT

myRT report for GCA_001639045.1_ASM163904v1

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Seq: LORH01000036.1 Legionella pneumophila strain PtVFX/2014 Contig_6, whole genome shotgun sequence (194129 bp)
Overview 1 RT 1: 45418-52156 bp Neighborhood of RT #1 [45418, 52170] Tra_M RVT_N RVT-GII GIIM Tnp_DNA_bind DDE_Tnp_1 Dimer_Tnp_Tn5 NTP-PPase_MazG_Cterm Feature: gene Location: 45418-47025 bp Feature: gene Location: 47223-47597 bp Feature: domain Description: Tra_M Location: 47271-47466 bp Feature: domain Description: Tra_M Location: 47271 -47466 bp Feature: gene Location: 48445-49965 bp Feature: RT Description: RVT_N Location: 48502-48745 bp Feature: RT Description: RVT_N Location: 48502-48745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48790-49414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48790-4941 4 bp Feature: domain Description: GIIM Note: maturase Location: 49465-49699 bp Feature: domain Description: GIIM Note: maturase Location: 49465-49699 bp Feature: gene Location: 50036-51487 bp Feature: domain Description: Tnp_DNA_bind Location: 50075-50243 bp Feature: domain Description: Tnp_DNA_bind Location: 50075-50243 bp Feature: domain Description: DDE_Tnp_1 Location: 50900-51194 bp Feature: domain Description: DDE_Tnp_1 Location: 50900-51 1 94 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 51200-51479 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 51 200-51 479 bp Feature: gene Location: 51793-52170 bp Feature: domain Description: NTP-PPase_MazG_Cterm Location: 51820-52156 bp Feature: domain Description: NTP-PPase_MazG_Cterm Location: 51 820-521 56 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra_M (pfam05261), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Tnp_DNA_bind (pfam14706), DDE_Tnp_1 (pfam01609), Dimer_Tnp_Tn5 (pfam02281), NTP-PPase_MazG_Cterm (cd11529)

Seq: LORH01000038.1 Legionella pneumophila strain PtVFX/2014 Contig_8, whole genome shotgun sequence (305346 bp)
Overview 1 RT 1: 47002-54035 bp Neighborhood of RT #1 [47002, 54070] TraD RVT_N RVT-GII GIIM TraA_Ti OLE1 DDE_Tnp_ISL3 Feature: gene Location: 47002-47265 bp Feature: domain Description: TraD Location: 47083-47257 bp Feature: domain Description: TraD Location: 47083-472 57 bp Feature: gene Location: 47252-47458 bp Feature: gene Location: 48156-49619 bp Feature: RT Description: RVT_N Location: 48234-48474 bp Feature: RT Description: RVT_N Location: 482 34-48474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48522-49146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4852 2 -49146 bp Feature: domain Description: GIIM Note: maturase Location: 49200-49431 bp Feature: domain Description: GIIM Note: maturase Location: 492 00-49431 bp Feature: gene Location: 49912-52557 bp Feature: domain Description: TraA_Ti Location: 49915-52075 bp Feature: domain Description: TraA_Ti Location: 49915-52 075 bp Feature: gene Location: 52883-54070 bp Feature: domain Description: OLE1 Location: 52916-53627 bp Feature: domain Description: OLE1 Location: 52 916-5362 7 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 53720-54035 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 5372 0-54035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraD (pfam06412), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraA_Ti (TIGR02768), OLE1 (COG1398), DDE_Tnp_ISL3 (pfam01610)

Seq: LORH01000007.1 Legionella pneumophila strain PtVFX/2014 Contig_15, whole genome shotgun sequence (51982 bp)
Overview 1 RT 1: 100-3008 bp Neighborhood of RT #1 [100, 3097] PHA02517 RVT-GII RVT_1 GIIM InsE HTH_23 HTH_33 Feature: gene Location: 100-384 bp Feature: domain Description: PHA02517 Location: 106-346 bp Feature: domain Description: PHA02517 Location: 106-3 46 bp Feature: gene Location: 463-1617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 667-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 667-865 bp Feature: RT Description: RVT_1 Location: 919-1237 bp Feature: RT Description: RVT_1 Location: 919-123 7 bp Feature: domain Description: GIIM Note: maturase Location: 1315-1534 bp Feature: domain Description: GIIM Note: maturase Location: 13 15-153 4 bp Feature: gene Location: 2154-2447 bp Feature: domain Description: InsE Location: 2163-2427 bp Feature: domain Description: InsE Location: 2163 -2427 bp Feature: gene Location: 2540-3097 bp Feature: domain Description: HTH_23 Location: 2627-2750 bp Feature: domain Description: HTH_23 Location: 2627-2750 bp Feature: domain Description: HTH_33 Location: 2843-3008 bp Feature: domain Description: HTH_3 3 Location: 2843 -3 008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), HTH_23 (pfam13384), HTH_33 (pfam13592), RVT-GII, RVT_1 (pfam00078), GIIM (pfam08388)