myRT

myRT report for GCA_001640045.1_THIOM

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Seq: LUTY01002084.1 Candidatus Thiomargarita nelsonii strain THI036 THI3137, whole genome shotgun sequence (590 bp)
Overview 1 RT 1: 1-580 bp Neighborhood of RT #1 [1, 590] RVT_N RVT-GII Feature: gene Location: 1-590 bp Ori: OAD20821.1 Feature: domain Description: RVT_N Location: 4-184 bp Feature: domain Description: RVT_N Location: 4-1 84 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250-580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250-580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: LUTY01002881.1 Candidatus Thiomargarita nelsonii strain THI036 THI726, whole genome shotgun sequence (2060 bp)
Overview 1 RT 1: 16-1867 bp Neighborhood of RT #1 [16, 1998] RVT_N RVT-GII GIIM HNH Feature: gene Location: 16-1998 bp Ori: OAD19250.1 Feature: domain Description: RVT_N Location: 133-376 bp Feature: domain Description: RVT_N Location: 133-376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 442-1144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 442 -1144 bp Feature: domain Description: GIIM Note: maturase Location: 1291-1507 bp Feature: domain Description: GIIM Note: maturase Location: 12 91-1507 bp Feature: domain Description: HNH Note: nucleases Location: 1732-1867 bp Feature: domain Description: HNH Note: nucleases Location: 1732 -1867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: LUTY01002210.1 Candidatus Thiomargarita nelsonii strain THI036 THI3289, whole genome shotgun sequence (560 bp)
Overview 1 RT 1: 1-538 bp Neighborhood of RT #1 [1, 560] RVT-GII Feature: gene Location: 1-560 bp Ori: OAD20656.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-53 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LUTY01000835.1 Candidatus Thiomargarita nelsonii strain THI036 THI181, whole genome shotgun sequence (3508 bp)
Overview 1 RT 1: 124-3338 bp Neighborhood of RT #1 [124, 3508] RVT_N RVT-GII GIIM HNHc tspaseT_teng_C Feature: gene Location: 124-276 bp Feature: gene Location: 532-2445 bp Ori: OAD22611.1 Feature: domain Description: RVT_N Location: 643-886 bp Feature: domain Description: RVT_N Location: 64 3-886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 952-1654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 952-1654 bp Feature: domain Description: GIIM Note: maturase Location: 1786-2017 bp Feature: domain Description: GIIM Note: maturase Location: 1786-2017 bp Feature: domain Description: HNHc Note: nucleases Location: 2215-2374 bp Feature: domain Description: HNHc Note: nucleases Location: 2215-2374 bp Feature: gene Location: 2623-2787 bp Feature: gene Location: 3095-3508 bp Ori: OAD22613.1 Feature: domain Description: tspaseT_teng_C Location: 3104-3338 bp Feature: domain Description: tspaseT_teng_C Location: 3104 -3338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), tspaseT_teng_C (TIGR01766)

Seq: LUTY01000438.1 Candidatus Thiomargarita nelsonii strain THI036 THI143, whole genome shotgun sequence (3800 bp)
Overview 1 RT 1: 81-3700 bp Neighborhood of RT #1 [81, 3738] RVT_N RVT-GII GIIM HNH InsQ SR_IS607_transposase_like Feature: gene Location: 81-2012 bp Ori: OAD23307.1 Feature: domain Description: RVT_N Location: 207-450 bp Feature: domain Description: RVT_N Location: 207-45 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 516-1218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 16-1218 bp Feature: domain Description: GIIM Note: maturase Location: 1353-1581 bp Feature: domain Description: GIIM Note: maturase Location: 135 3-15 81 bp Feature: domain Description: HNH Note: nucleases Location: 1806-1944 bp Feature: domain Description: HNH Note: nucleases Location: 1806-1944 bp Feature: gene Location: 2496-3338 bp Ori: OAD23308.1 Feature: domain Description: InsQ Location: 2532-3210 bp Feature: domain Description: InsQ Location: 25 32-3210 bp Feature: gene Location: 3313-3738 bp Ori: OAD23309.1 Feature: domain Description: SR_IS607_transposase_like Location: 3316-3700 bp Feature: domain Description: SR_IS607_transposase_like Location: 3316-3700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), InsQ (COG0675), SR_IS607_transposase_like (cd03769)

Seq: LUTY01002018.1 Candidatus Thiomargarita nelsonii strain THI036 THI3071, whole genome shotgun sequence (603 bp)
Overview 1 RT 1: 1-112 bp Neighborhood of RT #1 [1, 304] RVT-UG4 Feature: gene Location: 1-304 bp Ori: OAD20902.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7-112 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7-112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4

Seq: LUTY01000486.1 Candidatus Thiomargarita nelsonii strain THI036 THI1485, whole genome shotgun sequence (1277 bp)
Overview 1 RT 1: 1-1136 bp Neighborhood of RT #1 [1, 1136] RVT-GII Feature: gene Location: 1-225 bp Ori: OAD23221.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-214 bp Feature: gene Location: 930-1136 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LUTY01001958.1 Candidatus Thiomargarita nelsonii strain THI036 THI3003, whole genome shotgun sequence (620 bp)
Overview 1 RT 1: 1-619 bp Neighborhood of RT #1 [1, 620] RVT-GII Feature: gene Location: 1-620 bp Ori: OAD20984.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31-619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31-619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LUTY01002503.1 Candidatus Thiomargarita nelsonii strain THI036 THI375, whole genome shotgun sequence (2733 bp)
Overview 1 RT 1: 239-2504 bp Neighborhood of RT #1 [239, 2584] RVT-GII GIIM HNHc YhhI Feature: gene Location: 239-1330 bp Ori: OAD20244.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 326-539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 326-539 bp Feature: domain Description: GIIM Note: maturase Location: 680-902 bp Feature: domain Description: GIIM Note: maturase Location: 680-9 02 bp Feature: domain Description: HNHc Note: nucleases Location: 1094-1247 bp Feature: domain Description: HNHc Note: nucleases Location: 109 4-1247 bp Feature: gene Location: 1784-2251 bp Feature: gene Location: 2246-2584 bp Ori: OAD20246.1 Feature: domain Description: YhhI Location: 2276-2504 bp Feature: domain Description: YhhI Location: 2276-2504 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), YhhI (COG5433)

Seq: LUTY01002045.1 Candidatus Thiomargarita nelsonii strain THI036 THI309, whole genome shotgun sequence (2981 bp)
Overview 1 RT 1: 390-2646 bp Neighborhood of RT #1 [390, 2646] RVT_N RVT-GII GIIM McrA Feature: gene Location: 390-2324 bp Ori: OAD20874.1 Feature: domain Description: RVT_N Location: 519-762 bp Feature: domain Description: RVT_N Location: 519-762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 828-1530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 828-1530 bp Feature: domain Description: GIIM Note: maturase Location: 1662-1893 bp Feature: domain Description: GIIM Note: maturase Location: 1662-1893 bp Feature: domain Description: McrA Location: 2031-2265 bp Feature: domain Description: McrA Location: 2031-2265 bp Feature: gene Location: 2458-2646 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)