myRT

myRT report for GCA_001640245.1_ASM164024v1

Download annotations/find similar RTs

Seq: LSGU01000001.1 Escherichia coli strain WCE307 Contig_1, whole genome shotgun sequence (129829 bp)
Overview 1 RT 1: 62614-66555 bp Neighborhood of RT #1 [62614, 66555] RVT-Retrons Feature: gene Location: 62614-63753 bp Feature: gene Location: 63799-63966 bp Feature: gene Location: 63988-65760 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 64147-64765 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 641 47-64765 bp Feature: gene Location: 65981-66124 bp Feature: gene Location: 66316-66555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: LSGU01000231.1 Escherichia coli strain WCE307 Contig_232, whole genome shotgun sequence (4712 bp)
Overview 1 RT 1: 3-1014 bp Neighborhood of RT #1 [3, 1022] RVT-GII PRK10173 PRK10173 Feature: gene Location: 3-239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-84 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-84 bp Feature: gene Location: 278-589 bp Feature: domain Description: PRK10173 Location: 281-500 bp Feature: domain Description: PRK10173 Location: 2 81-500 bp Feature: gene Location: 573-1022 bp Feature: domain Description: PRK10173 Location: 576-1014 bp Feature: domain Description: PRK10173 Location: 576-1014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII

Seq: LSGU01000251.1 Escherichia coli strain WCE307 Contig_252, whole genome shotgun sequence (2855 bp)
Overview 1 RT 1: 691-2608 bp Neighborhood of RT #1 [691, 2853] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 691-1095 bp Feature: domain Description: InsE Location: 721-1057 bp Feature: domain Description: InsE Location: 721-1057 bp Feature: gene Location: 1124-1480 bp Feature: domain Description: PHA02517 Location: 1127-1436 bp Feature: domain Description: PHA02517 Location: 1127-143 6 bp Feature: gene Location: 1597-2853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1603-2335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1603 -23 3 5 bp Feature: domain Description: GIIM Note: maturase Location: 2410-2608 bp Feature: domain Description: GIIM Note: maturase Location: 2410-2608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: LSGU01000005.1 Escherichia coli strain WCE307 Contig_5, whole genome shotgun sequence (1678 bp)
Overview 1 RT 1: 3-1673 bp Neighborhood of RT #1 [3, 1675] RVT-GII InsE Feature: gene Location: 3-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: gene Location: 960-1178 bp Feature: gene Location: 1400-1675 bp Feature: domain Description: InsE Location: 1442-1673 bp Feature: domain Description: InsE Location: 14 4 2-1673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII

Seq: LSGU01000079.1 Escherichia coli strain WCE307 Contig_79, whole genome shotgun sequence (250417 bp)
Overview 1 RT 1: 212308-216329 bp Neighborhood of RT #1 [212308, 216329] PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 212308-212520 bp Feature: gene Location: 213025-214572 bp Feature: domain Description: PRK13889 Location: 213028-213607 bp Feature: domain Description: PRK13889 Location: 213028-213607 bp Feature: gene Location: 214649-215749 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 214790-215342 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 214790-215 342 bp Feature: gene Location: 215742-216023 bp Feature: domain Description: HTH_XRE Location: 215757-215922 bp Feature: domain Description: HTH_XRE Location: 215 75 7-215 922 bp Feature: gene Location: 216114-216329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)