myRT

myRT report for GCA_001641615.1_ASM164161v1

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Seq: LRRU01000013.1 Pseudoalteromonas gelatinilytica strain NH153 NH153_S13, whole genome shotgun sequence (29346 bp)
Overview 1 RT 1: 25346-29009 bp Neighborhood of RT #1 [25346, 29233] NicK RVT_N RVT-GII GIIM Feature: gene Location: 25346-26287 bp Feature: domain Description: NicK Location: 25490-26261 bp Feature: domain Description: NicK Location: 25490-26261 bp Feature: gene Location: 26597-26923 bp Feature: gene Location: 27719-29233 bp Feature: domain Description: RVT_N Location: 27809-28052 bp Feature: domain Description: RVT_N Location: 27809-28052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28097-28724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28097-28724 bp Feature: domain Description: GIIM Note: maturase Location: 28784-29009 bp Feature: domain Description: GIIM Note: maturase Location: 28784-29009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NicK (COG2946), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LRRU01000017.1 Pseudoalteromonas gelatinilytica strain NH153 NH153_S17, whole genome shotgun sequence (227059 bp)
Overview 1 RT 1: 157328-163949 bp Neighborhood of RT #1 [157328, 163949] XerC RVT-Retrons Feature: gene Location: 157328-160597 bp Feature: gene Location: 160590-161954 bp Feature: domain Description: XerC Location: 160719-161817 bp Feature: domain Description: XerC Location: 160719-161817 bp Feature: gene Location: 162417-163229 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 162483-162996 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 162 483-162 996 bp Feature: gene Location: 163267-163533 bp Feature: gene Location: 163800-163949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerC (COG4973), RVT-Retrons

Seq: LRRU01000018.1 Pseudoalteromonas gelatinilytica strain NH153 NH153_S18, whole genome shotgun sequence (409412 bp)
Overview 1 RT 1: 352428-363827 bp Neighborhood of RT #1 [352428, 363827] NhaC GSDH dnaG RVT-UNC Feature: gene Location: 352428-353804 bp Feature: domain Description: NhaC Location: 352440-353790 bp Feature: domain Description: NhaC Location: 3 52440-3 53 790 bp Feature: gene Location: 354044-355180 bp Feature: domain Description: GSDH Location: 354188-355145 bp Feature: domain Description: GSDH Location: 3 54188-3 55145 bp Feature: gene Location: 355524-359072 bp Feature: domain Description: dnaG Location: 355539-356739 bp Feature: domain Description: dnaG Location: 3 5553 9-3 5673 9 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 357492-358053 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3 57492-3 58053 bp Feature: gene Location: 359111-362923 bp Feature: gene Location: 362916-363827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NhaC (COG1757), GSDH (pfam07995), dnaG (TIGR01391), RVT-UG10/RVT-UG2/RVT-UG9/RVT-UG25(RVT-UNC)

Seq: LRRU01000019.1 Pseudoalteromonas gelatinilytica strain NH153 NH153_S19, whole genome shotgun sequence (582015 bp)
Overview 1 RT 1: 114-5182 bp Neighborhood of RT #1 [114, 5376] RVT_N RVT-GII GIIM TPR KOG1126 Sulfotransfer_3 Feature: gene Location: 114-1628 bp Feature: domain Description: RVT_N Location: 204-447 bp Feature: domain Description: RVT_N Location: 204 -4 4 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 492-1119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 92-1119 bp Feature: domain Description: GIIM Note: maturase Location: 1179-1404 bp Feature: domain Description: GIIM Note: maturase Location: 1179-14 04 bp Feature: gene Location: 2688-2843 bp Feature: gene Location: 3892-5376 bp Feature: domain Description: TPR Location: 3901-4276 bp Feature: domain Description: TPR Location: 3901-4 276 bp Feature: domain Description: KOG1126 Location: 4414-4516 bp Feature: domain Description: KOG1126 Location: 4 4 14 -4 516 bp Feature: domain Description: Sulfotransfer_3 Location: 4621-5182 bp Feature: domain Description: Sulfotransfer_3 Location: 4 621-5182 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TPR (smart00028), KOG1126 (KOG1126, DNA-binding cell division cycle control protein ), Sulfotransfer_3 (pfam13469)

Seq: LRRU01000020.1 Pseudoalteromonas gelatinilytica strain NH153 NH153_S20, whole genome shotgun sequence (931515 bp)
Overview 1 RT 1: 111929-117083 bp Neighborhood of RT #1 [111929, 117091] Arm-DNA-bind_3 INT_P4_C RVT-Retrons SecB Feature: gene Location: 111929-112462 bp Feature: gene Location: 112766-114025 bp Feature: domain Description: Arm-DNA-bind_3 Location: 112829-113066 bp Feature: domain Description: Arm-DNA-bind_3 Location: 112829-113066 bp Feature: domain Description: INT_P4_C Location: 113438-114005 bp Feature: domain Description: INT_P4_C Location: 113438-114005 bp Feature: gene Location: 114426-115631 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 114576-115149 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1145 76-115 149 bp Feature: gene Location: 115631-116359 bp Feature: gene Location: 116690-117091 bp Feature: domain Description: SecB Location: 116804-117083 bp Feature: domain Description: SecB Location: 116804-117083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), RVT-Retrons, SecB (pfam02556)

Seq: LRRU01000023.1 Pseudoalteromonas gelatinilytica strain NH153 NH153_S23, whole genome shotgun sequence (309767 bp)
Overview 1 RT 1: 530-4666 bp Neighborhood of RT #1 [530, 6267] RVT_N RVT-GII GIIM DUF4365 TPR TPR TPR Feature: gene Location: 530-2044 bp Feature: domain Description: RVT_N Location: 620-863 bp Feature: domain Description: RVT_N Location: 6 20-86 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 908-1535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 908-1535 bp Feature: domain Description: GIIM Note: maturase Location: 1595-1820 bp Feature: domain Description: GIIM Note: maturase Location: 1595-1820 bp Feature: gene Location: 2131-2352 bp Feature: gene Location: 2398-6267 bp Feature: domain Description: DUF4365 Location: 2482-2845 bp Feature: domain Description: DUF436 5 Location: 2482-2845 bp Feature: domain Description: TPR Location: 3133-3271 bp Feature: domain Description: TPR Location: 3133-3271 bp Feature: domain Description: TPR Location: 3688-3931 bp Feature: domain Description: TPR Location: 36 88-3931 bp Feature: domain Description: TPR Location: 4402-4666 bp Feature: domain Description: TPR Location: 4402-46 6 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4365 (pfam14280), TPR (smart00028)

Seq: LRRU01000004.1 Pseudoalteromonas gelatinilytica strain NH153 NH153_S4, whole genome shotgun sequence (379456 bp)
Overview 1 RT 1: 530-2944 bp Neighborhood of RT #1 [530, 2944] RVT_N RVT-GII GIIM Feature: gene Location: 530-2044 bp Feature: domain Description: RVT_N Location: 620-863 bp Feature: domain Description: RVT_N Location: 620-863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 908-1535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 908-1535 bp Feature: domain Description: GIIM Note: maturase Location: 1595-1820 bp Feature: domain Description: GIIM Note: maturase Location: 1595-1820 bp Feature: gene Location: 2060-2236 bp Feature: gene Location: 2309-2944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)