myRT

myRT report for GCA_001641695.1_ASM164169v1

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Seq: LSEF01000085.1 Bradyrhizobium neotropicale strain BR 10247 contig62, whole genome shotgun sequence (282016 bp)
Overview 1 RT 1: 245108-252412 bp Neighborhood of RT #1 [245108, 252579] OMP_b-brl uvrA RVT-G2L HAD_PGPase nuc_hydro PRK10768 Feature: gene Location: 245108-245863 bp Ori: OAF12143.1 Feature: domain Description: OMP_b-brl Location: 245141-245753 bp Feature: domain Description: OMP_b-brl Location: 2451 41 -245753 bp Feature: gene Location: 246199-249174 bp Ori: OAF12144.1 Feature: domain Description: uvrA Location: 246256-249127 bp Feature: domain Description: uvrA Location: 246256-2491 27 bp Feature: gene Location: 249698-250957 bp Ori: OAF12145.1 Feature: RT Description: RVT-G2L Note: G2L RT Location: 249944-250586 bp Feature: RT Description: RVT-G2L Note: G2L RT Location: 249944-250586 bp Feature: gene Location: 250979-251620 bp Ori: OAF12146.1 Feature: domain Description: HAD_PGPase Location: 250994-251588 bp Feature: domain Description: HAD_PGPase Location: 250994-251 588 bp Feature: gene Location: 251656-252579 bp Ori: OAF12191.1 Feature: domain Description: nuc_hydro Location: 251719-251971 bp Feature: domain Description: nuc_hydro Location: 251 71 9-251 971 bp Feature: domain Description: PRK10768 Location: 252019-252412 bp Feature: domain Description: PRK1 0768 Location: 25201 9-25241 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OMP_b-brl (pfam13505), uvrA (PRK00349), RVT-G2L, HAD_PGPase (cd16421), nuc_hydro (cl00226), PRK10768 (ribonucleoside hydrolase RihC; Provisional)

Seq: LSEF01000072.1 Bradyrhizobium neotropicale strain BR 10247 contig50, whole genome shotgun sequence (2066 bp)
Overview 1 RT 1: 535-1971 bp Neighborhood of RT #1 [535, 2066] RVT-GII GIIM Feature: gene Location: 535-1083 bp Feature: gene Location: 1467-2066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1518-1689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1518-1689 bp Feature: domain Description: GIIM Note: maturase Location: 1758-1971 bp Feature: domain Description: GIIM Note: maturase Location: 1758-1971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LSEF01000115.1 Bradyrhizobium neotropicale strain BR 10247 contig9, whole genome shotgun sequence (8749 bp)
Overview 1 RT 1: 5912-8654 bp Neighborhood of RT #1 [5912, 8749] Peptidase_S41_TRI Usp USP_Like RVT-GII GIIM Feature: gene Location: 5912-6490 bp Ori: OAF07058.1 Feature: domain Description: Peptidase_S41_TRI Location: 6008-6449 bp Feature: domain Description: Peptidase_S41_TRI Location: 6008-6449 bp Feature: gene Location: 6934-7773 bp Ori: OAF07059.1 Feature: domain Description: Usp Location: 6937-7024 bp Feature: domain Description: Usp Location: 693 7-7024 bp Feature: domain Description: USP_Like Location: 7411-7765 bp Feature: domain Description: USP_Like Location: 7411-7765 bp Feature: gene Location: 8150-8749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8201-8372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8201-83 72 bp Feature: domain Description: GIIM Note: maturase Location: 8441-8654 bp Feature: domain Description: GIIM Note: maturase Location: 8441-8654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_S41_TRI (cd07562), Usp (pfam00582), USP_Like (cd00293), RVT-GII, GIIM (pfam08388)

Seq: LSEF01000109.1 Bradyrhizobium neotropicale strain BR 10247 contig84, whole genome shotgun sequence (13194 bp)
Overview 1 RT 1: 1-3451 bp Neighborhood of RT #1 [1, 3451] RVT-GII Intron_maturas2 Feature: gene Location: 1-1659 bp Ori: OAF07693.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268-1099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268-1099 bp Feature: domain Description: Intron_maturas2 Location: 1243-1492 bp Feature: domain Description: Intron_maturas2 Location: 124 3-14 92 bp Feature: gene Location: 2607-2918 bp Feature: gene Location: 3011-3451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: LSEF01000023.1 Bradyrhizobium neotropicale strain BR 10247 contig119, whole genome shotgun sequence (50341 bp)
Overview 1 RT 1: 46578-49341 bp Neighborhood of RT #1 [46578, 49712] RVT-GII Intron_maturas2 Feature: gene Location: 46578-46880 bp Feature: gene Location: 47449-47640 bp Feature: gene Location: 47850-49712 bp Ori: OAF19669.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48117-48948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48117-48948 bp Feature: domain Description: Intron_maturas2 Location: 49092-49341 bp Feature: domain Description: Intron_maturas2 Location: 49092-49341 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: LSEF01000076.1 Bradyrhizobium neotropicale strain BR 10247 contig54, whole genome shotgun sequence (3762 bp)
Overview 1 RT 1: 1-3582 bp Neighborhood of RT #1 [1, 3758] RVT-GII COG4584 IstB_IS21 Feature: gene Location: 1-581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250-577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250-577 bp Feature: gene Location: 1396-2895 bp Ori: OAF13452.1 Feature: domain Description: COG4584 Location: 1465-2251 bp Feature: domain Description: COG4584 Location: 146 5-2251 bp Feature: gene Location: 2895-3758 bp Ori: OAF13453.1 Feature: domain Description: IstB_IS21 Location: 3057-3582 bp Feature: domain Description: IstB_IS21 Location: 3057-3582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG4584 (Transposase ), IstB_IS21 (pfam01695)

Seq: LSEF01000095.1 Bradyrhizobium neotropicale strain BR 10247 contig71, whole genome shotgun sequence (86352 bp)
Overview 1 RT 1: 82476-86348 bp Neighborhood of RT #1 [82476, 86352] PRK06193 PBP2_TMBP_like RVT-GII Feature: gene Location: 82476-83069 bp Ori: OAF10326.1 Feature: domain Description: PRK06193 Location: 82569-83064 bp Feature: domain Description: PRK06193 Location: 82569-83064 bp Feature: gene Location: 83469-84743 bp Ori: OAF10333.1 Feature: domain Description: PBP2_TMBP_like Location: 83616-84723 bp Feature: domain Description: PBP2_TMBP_like Location: 83616-847 23 bp Feature: gene Location: 85772-86352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86021-86348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86021-86348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06193 (hypothetical protein; Provisional), PBP2_TMBP_like (cd13585), RVT-GII

Seq: LSEF01000026.1 Bradyrhizobium neotropicale strain BR 10247 contig121, whole genome shotgun sequence (135395 bp)
Overview 1 RT 1: 60557-67394 bp Neighborhood of RT #1 [60557, 67394] CHAT RVT-GII DDE_Tnp_1_2 Feature: gene Location: 60557-61831 bp Ori: OAF19199.1 Feature: domain Description: CHAT Location: 61382-61778 bp Feature: domain Description: CHAT Location: 6138 2-61778 bp Feature: gene Location: 61847-62674 bp Feature: gene Location: 63405-64529 bp Ori: OAF19201.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63696-64359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63696-64359 bp Feature: gene Location: 65306-65578 bp Ori: OAF19257.1 Feature: domain Description: DDE_Tnp_1_2 Location: 65324-65564 bp Feature: domain Description: DDE_Tnp_1_2 Location: 65324-65564 bp Feature: gene Location: 67083-67394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHAT (pfam12770), RVT-GII, DDE_Tnp_1_2 (pfam13586)

Seq: LSEF01000075.1 Bradyrhizobium neotropicale strain BR 10247 contig53, whole genome shotgun sequence (3077 bp)
Overview 1 RT 1: 1-2552 bp Neighborhood of RT #1 [1, 2689] RVT-GII YCII HTH_32 DDE_3 Feature: gene Location: 1-581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250-577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250-577 bp Feature: gene Location: 1224-1652 bp Ori: OAF13517.1 Feature: domain Description: YCII Location: 1407-1584 bp Feature: domain Description: YCII Location: 1407-1584 bp Feature: gene Location: 1616-2689 bp Ori: OAF13519.1 Feature: domain Description: HTH_32 Location: 1736-1973 bp Feature: domain Description: HTH_32 Location: 1736-19 73 bp Feature: domain Description: DDE_3 Location: 2102-2552 bp Feature: domain Description: DDE_3 Location: 2102-2552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YCII (pfam03795), HTH_32 (pfam13565), DDE_3 (pfam13358)

Seq: LSEF01000019.1 Bradyrhizobium neotropicale strain BR 10247 contig115, whole genome shotgun sequence (1865 bp)
Overview 1 RT 1: 163-1357 bp Neighborhood of RT #1 [163, 1452] RVT-GII GIIM Feature: gene Location: 163-1452 bp Ori: OAF19731.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412-1075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412-10 75 bp Feature: domain Description: GIIM Note: maturase Location: 1144-1357 bp Feature: domain Description: GIIM Note: maturase Location: 1144-1357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LSEF01000027.1 Bradyrhizobium neotropicale strain BR 10247 contig122, whole genome shotgun sequence (19616 bp)
Overview 1 RT 1: 41-5351 bp Neighborhood of RT #1 [41, 5380] DDE_5 DDE_Tnp_1_2 RVT-GII ParD ParE Feature: gene Location: 41-1390 bp Ori: OAF19139.1 Feature: domain Description: DDE_5 Location: 119-911 bp Feature: domain Description: DDE_5 Location: 11 9-911 bp Feature: gene Location: 1465-1737 bp Ori: OAF19140.1 Feature: domain Description: DDE_Tnp_1_2 Location: 1483-1723 bp Feature: domain Description: DDE_Tnp_1_2 Location: 1483-1723 bp Feature: gene Location: 2517-3641 bp Ori: OAF19141.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2808-3471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2808-3471 bp Feature: gene Location: 4729-5016 bp Ori: OAF19155.1 Feature: domain Description: ParD Location: 4732-4945 bp Feature: domain Description: ParD Location: 4732-4945 bp Feature: gene Location: 5024-5380 bp Ori: OAF19142.1 Feature: domain Description: ParE Location: 5039-5351 bp Feature: domain Description: ParE Location: 5039-5351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), DDE_Tnp_1_2 (pfam13586), RVT-GII, ParD (pfam09386), ParE (COG3668)

Seq: LSEF01000028.1 Bradyrhizobium neotropicale strain BR 10247 contig123, whole genome shotgun sequence (296919 bp)
Overview 1 RT 1: 294000-296824 bp Neighborhood of RT #1 [294000, 296919] RVT-GII GIIM Feature: gene Location: 294000-294200 bp Feature: gene Location: 295593-295994 bp Feature: gene Location: 296320-296919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 296371-296542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 296371-296542 bp Feature: domain Description: GIIM Note: maturase Location: 296611-296824 bp Feature: domain Description: GIIM Note: maturase Location: 296611-296824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LSEF01000049.1 Bradyrhizobium neotropicale strain BR 10247 contig3, whole genome shotgun sequence (79306 bp)
Overview 1 RT 1: 74758-79139 bp Neighborhood of RT #1 [74758, 79306] RVT-GII Intron_maturas2 Feature: gene Location: 74758-75312 bp Feature: gene Location: 75972-76193 bp Feature: gene Location: 77648-79306 bp Ori: OAF16953.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77915-78746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77915-78746 bp Feature: domain Description: Intron_maturas2 Location: 78890-79139 bp Feature: domain Description: Intron_maturas2 Location: 78890-7913 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: LSEF01000025.1 Bradyrhizobium neotropicale strain BR 10247 contig120, whole genome shotgun sequence (288100 bp)
Overview 1 RT 1: 285746-288005 bp Neighborhood of RT #1 [285746, 288100] RVT-GII GIIM Feature: gene Location: 285746-286258 bp Feature: gene Location: 286575-286763 bp Feature: gene Location: 287501-288100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 287552-287723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 287552-287723 bp Feature: domain Description: GIIM Note: maturase Location: 287792-288005 bp Feature: domain Description: GIIM Note: maturase Location: 287792-288005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LSEF01000089.1 Bradyrhizobium neotropicale strain BR 10247 contig66, whole genome shotgun sequence (218182 bp)
Overview 1 RT 1: 96650-100984 bp Neighborhood of RT #1 [96650, 101226] Resolvase RVT-G2L4 GIIM Fic Feature: gene Location: 96650-97054 bp Feature: gene Location: 97425-98102 bp Ori: OAF11670.1 Feature: domain Description: Resolvase Location: 97446-97851 bp Feature: domain Description: Resolvase Location: 97446-97851 bp Feature: gene Location: 98705-100165 bp Ori: OAF11561.1 Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 99023-99644 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 99023-99644 bp Feature: domain Description: GIIM Note: maturase Location: 99869-99983 bp Feature: domain Description: GIIM Note: maturase Location: 99869-99983 bp Feature: gene Location: 100334-100537 bp Feature: gene Location: 100546-101226 bp Ori: OAF11563.1 Feature: domain Description: Fic Location: 100717-100984 bp Feature: domain Description: Fic Location: 100717-100984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), RVT-G2L4, GIIM (pfam08388), Fic (pfam02661)

Seq: LSEF01000068.1 Bradyrhizobium neotropicale strain BR 10247 contig47, whole genome shotgun sequence (5237 bp)
Overview 1 RT 1: 32-4489 bp Neighborhood of RT #1 [32, 4521] IS285 AlbA_2 RVT-GII Intron_maturas2 SRAP Feature: gene Location: 32-1300 bp Ori: OAF14851.1 Feature: domain Description: IS285 Location: 320-1214 bp Feature: domain Description: IS285 Location: 320-1214 bp Feature: gene Location: 1365-2573 bp Ori: OAF14852.1 Feature: domain Description: AlbA_2 Location: 1698-2073 bp Feature: domain Description: AlbA_2 Location: 16 98-2073 bp Feature: gene Location: 2581-4521 bp Ori: OAF14853.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2761-3592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2761-3592 bp Feature: domain Description: Intron_maturas2 Location: 3736-3985 bp Feature: domain Description: Intron_maturas2 Location: 3736-3985 bp Feature: domain Description: SRAP Location: 4171-4489 bp Feature: domain Description: SRAP Location: 4171-4489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), AlbA_2 (pfam04326), RVT-GII, Intron_maturas2 (pfam01348), SRAP (pfam02586)