myRT

myRT report for GCA_001642955.1_ASM164295v1

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Seq: LWSK01000001.1 Rubripirellula obstinata strain CECT 8602 contig1, whole genome shotgun sequence (249744 bp)
Overview 1 RT 1: 45951-53673 bp Neighborhood of RT #1 [45951, 53673] RMtype1_S_Eco16444ORF1681_TRD1-CR1_like RMtype1_S_Eco16444ORF1681_TRD1-CR1_like COG0610 COG0610 RVT-UG21 Phage_int_SAM_1 INT_C_like_6 Feature: gene Location: 45951-47147 bp Feature: domain Description: RMtype1_S_Eco16444ORF1681_TRD1-CR1_like Location: 45972-46515 bp Feature: domain Description: RMtype1 _S_Eco1 6444ORF1 681 _TRD1 -CR1 _like Location: 45972-4651 5 bp Feature: domain Description: RMtype1_S_Eco16444ORF1681_TRD1-CR1_like Location: 46767-47103 bp Feature: domain Description: RMtype1 _S_Eco1 6444ORF1 681 _TRD1 -CR1 _like Location: 46767-471 03 bp Feature: gene Location: 47159-50590 bp Feature: domain Description: COG0610 Location: 47195-48041 bp Feature: domain Description: COG061 0 Location: 471 95-48041 bp Feature: domain Description: COG0610 Location: 48227-50363 bp Feature: domain Description: COG061 0 Location: 48227-50363 bp Feature: gene Location: 50649-52244 bp Feature: RT Description: RVT-UG21 Note: UG21 RT Location: 51060-51468 bp Feature: RT Description: RVT-UG21 Note: UG21 RT Location: 51 060-51 468 bp Feature: gene Location: 52247-53245 bp Feature: domain Description: Phage_int_SAM_1 Location: 52403-52595 bp Feature: domain Description: Phage_int_SAM_1 Location: 52403-52595 bp Feature: domain Description: INT_C_like_6 Location: 52691-53228 bp Feature: domain Description: INT_C_like_6 Location: 52691 -53228 bp Feature: gene Location: 53452-53673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_Eco16444ORF1681_TRD1-CR1_like (cd17282), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-UG21, Phage_int_SAM_1 (pfam02899), INT_C_like_6 (cd01196)

Seq: LWSK01000004.1 Rubripirellula obstinata strain CECT 8602 contig4, whole genome shotgun sequence (135321 bp)
Overview 1 RT 1: 83970-88312 bp Neighborhood of RT #1 [83970, 88878] RVT-GII GIIM CsrA EstA Feature: gene Location: 83970-84119 bp Feature: gene Location: 84318-84488 bp Feature: gene Location: 84497-85696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84728-85349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8472 8-85349 bp Feature: domain Description: GIIM Note: maturase Location: 85397-85625 bp Feature: domain Description: GIIM Note: maturase Location: 85397-8562 5 bp Feature: gene Location: 86340-86750 bp Feature: domain Description: CsrA Location: 86343-86481 bp Feature: domain Description: CsrA Location: 86343-86481 bp Feature: gene Location: 86752-88878 bp Feature: domain Description: EstA Location: 88045-88312 bp Feature: domain Description: EstA Location: 88045-88312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CsrA (pfam02599), EstA (COG1075)