myRT

myRT report for GCA_001643135.1_ASM164313v1

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Seq: LSTR01000078.1 Sphingobium yanoikuyae strain CD09_2 CD09_2contig_69, whole genome shotgun sequence (12521 bp)
Overview 1 RT 1: 6248-11505 bp Neighborhood of RT #1 [6248, 11588] CsdA ligand_gated_channel RVT-GII GIIM Feature: gene Location: 6248-7510 bp Ori: OAH39571.1 Feature: domain Description: CsdA Location: 6389-7499 bp Feature: domain Description: CsdA Location: 6389-7499 bp Feature: gene Location: 7528-9897 bp Ori: OAH39572.1 Feature: domain Description: ligand_gated_channel Location: 7690-9895 bp Feature: domain Description: ligand_gated_channel Location: 7690-9895 bp Feature: gene Location: 10266-11588 bp Ori: OAH39573.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10557-11220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0557-1 1 220 bp Feature: domain Description: GIIM Note: maturase Location: 11292-11505 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 292-1 1 505 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CsdA (COG0520), ligand_gated_channel (cd01347), RVT-GII, GIIM (pfam08388)

Seq: LSTR01000057.1 Sphingobium yanoikuyae strain CD09_2 CD09_2contig_5, whole genome shotgun sequence (199112 bp)
Overview 1 RT 1: 189727-195573 bp Neighborhood of RT #1 [189727, 195608] RES RVT-UG9 PRK05755 PRK14975 PRK09182 Feature: gene Location: 189727-190464 bp Ori: OAH41459.1 Feature: domain Description: RES Location: 189952-190384 bp Feature: domain Description: RES Location: 189952 -190384 bp Feature: gene Location: 190530-191042 bp Feature: gene Location: 191333-193027 bp Ori: OAH41444.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 191597-192233 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 191597-192 2 33 bp Feature: gene Location: 193020-194570 bp Ori: OAH41445.1 Feature: domain Description: PRK05755 Location: 193380-193584 bp Feature: domain Description: PRK05755 Location: 193380-193584 bp Feature: domain Description: PRK14975 Location: 193767-194514 bp Feature: domain Description: PRK14975 Location: 193767-194514 bp Feature: gene Location: 194688-195608 bp Ori: OAH41446.1 Feature: domain Description: PRK09182 Location: 194712-195573 bp Feature: domain Description: PRK09182 Location: 194712 -195573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RES (smart00953), RVT-UG9, PRK05755 (DNA polymerase I; Provisional), PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), PRK09182 (DNA polymerase III subunit epsilon; Validated)