myRT

myRT report for GCA_001643155.1_ASM164315v1

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Seq: LSOB01000005.1 Serratia marcescens strain 092713_C_TSB contig_1048, whole genome shotgun sequence (75750 bp)
Overview 1 RT 1: 22564-25013 bp Neighborhood of RT #1 [22564, 25018] YadA_stalk YadA_stalk YadA_anchor RVT-GII Feature: gene Location: 22564-23442 bp Ori: OAH32760.1 Feature: domain Description: YadA_stalk Location: 22828-22915 bp Feature: domain Description: YadA_stalk Location: 22828-2291 5 bp Feature: domain Description: YadA_stalk Location: 23032-23158 bp Feature: domain Description: YadA_stalk Location: 23032-231 58 bp Feature: domain Description: YadA_anchor Location: 23278-23440 bp Feature: domain Description: YadA_anchor Location: 23278-23440 bp Feature: gene Location: 24278-25018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24386-25013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24386-2501 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YadA_stalk (pfam05662), YadA_anchor (pfam03895), RVT-GII

Seq: LSOB01000027.1 Serratia marcescens strain 092713_C_TSB contig_549, whole genome shotgun sequence (551731 bp)
Overview 1 RT 1: 64131-69275 bp Neighborhood of RT #1 [64131, 69275] PRK15287 PRK15288 RVT-UG4 Feature: gene Location: 64131-64607 bp Ori: OAH25258.1 Feature: domain Description: PRK15287 Location: 64155-64605 bp Feature: domain Description: PRK152 87 Location: 64155-64605 bp Feature: gene Location: 64604-65149 bp Ori: OAH25259.1 Feature: domain Description: PRK15288 Location: 64652-65144 bp Feature: domain Description: PRK152 88 Location: 64652 -65144 bp Feature: gene Location: 65146-66090 bp Ori: OAH25260.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 65443-65890 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 65443-65890 bp Feature: gene Location: 66141-66920 bp Feature: gene Location: 67671-69275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15287 (fimbrial minor subunit StfF), PRK15288 (putative minor fimbrial subunit StfG; Provisional), RVT-UG4