myRT

myRT report for GCA_001643215.1_ASM164321v1

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Seq: LSTU01000056.1 Pseudomonas monteilii strain CD10_2 CD10_2_contig_6, whole genome shotgun sequence (108543 bp)
Overview 1 RT 1: 83550-87481 bp Neighborhood of RT #1 [83550, 87481] RVT-GII GIIM Feature: gene Location: 83550-83789 bp Feature: gene Location: 83853-84035 bp Feature: gene Location: 84501-85922 bp Ori: OAH46262.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84858-85473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84858-85473 bp Feature: domain Description: GIIM Note: maturase Location: 85530-85755 bp Feature: domain Description: GIIM Note: maturase Location: 85530-85755 bp Feature: gene Location: 86305-86637 bp Feature: gene Location: 86972-87481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LSTU01000041.1 Pseudomonas monteilii strain CD10_2 CD10_2_contig_46, whole genome shotgun sequence (187983 bp)
Overview 1 RT 1: 4725-8756 bp Neighborhood of RT #1 [4725, 8756] MvaT_DBD RVT-GII GIIM ArdC Feature: gene Location: 4725-4919 bp Feature: gene Location: 5044-5409 bp Ori: OAH47860.1 Feature: domain Description: MvaT_DBD Location: 5284-5407 bp Feature: domain Description: MvaT_DBD Location: 52 84-5407 bp Feature: gene Location: 5913-7334 bp Ori: OAH47861.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6270-6885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 70-6885 bp Feature: domain Description: GIIM Note: maturase Location: 6942-7167 bp Feature: domain Description: GIIM Note: maturase Location: 6942 -7167 bp Feature: gene Location: 7416-8354 bp Ori: OAH47862.1 Feature: domain Description: ArdC Location: 7422-8325 bp Feature: domain Description: ArdC Location: 742 2 -832 5 bp Feature: gene Location: 8442-8756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MvaT_DBD (cl40688), RVT-GII, GIIM (pfam08388), ArdC (COG4227)

Seq: LSTU01000022.1 Pseudomonas monteilii strain CD10_2 CD10_2_contig_29, whole genome shotgun sequence (148783 bp)
Overview 1 RT 1: 95747-101212 bp Neighborhood of RT #1 [95747, 101403] ribD TIGR00244 RVT_N RVT-GII YkfC HNHc YbaY Nnt1 Feature: gene Location: 95747-96877 bp Ori: OAH52709.1 Feature: domain Description: ribD Location: 95774-96848 bp Feature: domain Description: ribD Location: 95774-96848 bp Feature: gene Location: 96880-97344 bp Ori: OAH52773.1 Feature: domain Description: TIGR00244 Location: 96883-97321 bp Feature: domain Description: TIGR00244 Location: 96883 -973 21 bp Feature: gene Location: 97437-99143 bp Ori: OAH52710.1 Feature: domain Description: RVT_N Location: 97494-97731 bp Feature: domain Description: RVT_N Location: 97494-9773 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97782-98418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97782-98418 bp Feature: domain Description: YkfC Location: 98565-98769 bp Feature: domain Description: YkfC Location: 98565-98769 bp Feature: domain Description: HNHc Note: nucleases Location: 98922-99087 bp Feature: domain Description: HNHc Note: nucleases Location: 98922-99087 bp Feature: gene Location: 100291-100743 bp Ori: OAH52711.1 Feature: domain Description: YbaY Location: 100318-100711 bp Feature: domain Description: YbaY Location: 1003 18-100711 bp Feature: gene Location: 100744-101403 bp Ori: OAH52712.1 Feature: domain Description: Nnt1 Location: 100813-101212 bp Feature: domain Description: Nnt1 Location: 100813 -101212 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ribD (PRK10786), TIGR00244 (transcriptional regulator NrdR), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), YbaY (COG3126), Nnt1 (COG3897)

Seq: LSTU01000066.1 Pseudomonas monteilii strain CD10_2 CD10_2_contig_69, whole genome shotgun sequence (27720 bp)
Overview 1 RT 1: 13356-17204 bp Neighborhood of RT #1 [13356, 17204] RVT-GII GIIM Feature: gene Location: 13356-13628 bp Feature: gene Location: 13891-14190 bp Feature: gene Location: 14663-16084 bp Ori: OAH44319.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15020-15635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15020-15635 bp Feature: domain Description: GIIM Note: maturase Location: 15689-15917 bp Feature: domain Description: GIIM Note: maturase Location: 15689-15917 bp Feature: gene Location: 16452-16856 bp Feature: gene Location: 16992-17204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LSTU01000057.1 Pseudomonas monteilii strain CD10_2 CD10_2_contig_60, whole genome shotgun sequence (22546 bp)
Overview 1 RT 1: 11431-15666 bp Neighborhood of RT #1 [11431, 15666] RVT-Retrons Feature: gene Location: 11431-11643 bp Feature: gene Location: 11836-12780 bp Feature: gene Location: 12777-13730 bp Ori: OAH45971.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12888-13482 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12888-13482 bp Feature: gene Location: 14273-15175 bp Feature: gene Location: 15202-15666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: LSTU01000003.1 Pseudomonas monteilii strain CD10_2 CD10_2_contig_11, whole genome shotgun sequence (130447 bp)
Overview 1 RT 1: 97889-106628 bp Neighborhood of RT #1 [97889, 106630] FimD FimA RVT_N RVT-GII Resolvase RVT-GII GIIM HNHc PRK12488 Feature: gene Location: 97889-100324 bp Ori: OAH57053.1 Feature: domain Description: FimD Location: 97901-100313 bp Feature: domain Description: FimD Location: 97901-100313 bp Feature: gene Location: 100338-101420 bp Ori: OAH57054.1 Feature: domain Description: FimA Location: 100917-101418 bp Feature: domain Description: FimA Location: 100917-101418 bp Feature: gene Location: 101913-102623 bp Feature: domain Description: RVT_N Location: 101958-102201 bp Feature: domain Description: RVT_N Location: 101958-102201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102246-102624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102246 -1026 24 bp Feature: gene Location: 103051-104148 bp Ori: OAH57055.1 Feature: domain Description: Resolvase Location: 103093-103399 bp Feature: domain Description: Resolvase Location: 103093-103399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103414-103480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103414-103480 bp Feature: domain Description: GIIM Note: maturase Location: 103555-103786 bp Feature: domain Description: GIIM Note: maturase Location: 103555-103786 bp Feature: domain Description: HNHc Note: nucleases Location: 104008-104140 bp Feature: domain Description: HNHc Note: nucleases Location: 104008-104140 bp Feature: gene Location: 104323-104892 bp Feature: gene Location: 104966-106630 bp Ori: OAH57057.1 Feature: domain Description: PRK12488 Location: 104996-106628 bp Feature: domain Description: PRK12488 Location: 104996 -106 6 28 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimD (COG3188), FimA (pfam16970), RVT_N (pfam13655), RVT-GII, Resolvase (smart00857), GIIM (pfam08388), HNHc (smart00507), PRK12488 (cation/acetate symporter)

Seq: LSTU01000001.1 Pseudomonas monteilii strain CD10_2 CD10_2_contig_1, whole genome shotgun sequence (172721 bp)
Overview 1 RT 1: 74179-83002 bp Neighborhood of RT #1 [74179, 83004] PRK07232 MrcA RVT_N RVT-GII YkfC HNHc Smf SUA5 Feature: gene Location: 74179-75447 bp Ori: OAH57505.1 Feature: domain Description: PRK07232 Location: 74188-75397 bp Feature: domain Description: PRK07 232 Location: 7 4188-7 5397 bp Feature: gene Location: 75634-78087 bp Ori: OAH57506.1 Feature: domain Description: MrcA Location: 75640-78013 bp Feature: domain Description: MrcA Location: 7 5640-7 8013 bp Feature: gene Location: 78216-79922 bp Ori: OAH57507.1 Feature: domain Description: RVT_N Location: 78273-78516 bp Feature: domain Description: RVT_N Location: 7 827 3-7 8516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78561-79197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 8561-7 9197 bp Feature: domain Description: YkfC Location: 79404-79557 bp Feature: domain Description: YkfC Location: 7 9404-7 9557 bp Feature: domain Description: HNHc Note: nucleases Location: 79710-79866 bp Feature: domain Description: HNHc Note: nucleases Location: 7 97 10-7 9866 bp Feature: gene Location: 81307-82404 bp Ori: OAH57508.1 Feature: domain Description: Smf Location: 81343-82396 bp Feature: domain Description: Smf Location: 81343-82396 bp Feature: gene Location: 82447-83004 bp Ori: OAH57509.1 Feature: domain Description: SUA5 Location: 82465-83002 bp Feature: domain Description: SUA5 Location: 82465-83002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07232 (bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed), MrcA (COG5009), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), Smf (COG0758), SUA5 (pfam03481)

Seq: LSTU01000020.1 Pseudomonas monteilii strain CD10_2 CD10_2_contig_27, whole genome shotgun sequence (272754 bp)
Overview 1 RT 1: 1-3966 bp Neighborhood of RT #1 [1, 4025] RVT_N RVT-GII YkfC PilM PilN Feature: gene Location: 1-1424 bp Ori: OAH53321.1 Feature: domain Description: RVT_N Location: 58-301 bp Feature: domain Description: RVT_N Location: 58 -301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 346-982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 346-98 2 bp Feature: domain Description: YkfC Location: 1180-1285 bp Feature: domain Description: YkfC Location: 118 0-128 5 bp Feature: gene Location: 2611-3492 bp Ori: OAH53322.1 Feature: domain Description: PilM Location: 2614-3145 bp Feature: domain Description: PilM Location: 2614-3145 bp Feature: gene Location: 3489-4025 bp Ori: OAH53323.1 Feature: domain Description: PilN Location: 3492-3966 bp Feature: domain Description: PilN Location: 3492-3966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), PilM (pfam07419), PilN (pfam05137)

Seq: LSTU01000045.1 Pseudomonas monteilii strain CD10_2 CD10_2_contig_5, whole genome shotgun sequence (142106 bp)
Overview 1 RT 1: 45513-48693 bp Neighborhood of RT #1 [45513, 48693] RVT-GII SsuA_fam Feature: gene Location: 45513-47309 bp Ori: OAH47653.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46227-46917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46227-469 17 bp Feature: gene Location: 47876-48313 bp Ori: OAH47654.1 Feature: domain Description: SsuA_fam Location: 47882-48296 bp Feature: domain Description: SsuA_fam Location: 47882-4829 6 bp Feature: gene Location: 48295-48693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SsuA_fam (TIGR01728)