myRT

myRT report for GCA_001643805.1_CRJJGF_00093_v1.0

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Seq: JQVX01000012.1 Salmonella enterica strain CRJJGF_00093 SQ0141Contig12, whole genome shotgun sequence (51881 bp)
Overview 1 RT 1: 27308-32262 bp Neighborhood of RT #1 [27308, 32262] groEL RVT_N RVT-GII GIIM HNHc Feature: gene Location: 27308-28954 bp Feature: domain Description: groEL Location: 27314-28940 bp Feature: domain Description: groEL Location: 2731 4-28940 bp Feature: gene Location: 29295-29621 bp Feature: gene Location: 30052-31749 bp Feature: RT Description: RVT_N Location: 30115-30349 bp Feature: RT Description: RVT_N Location: 301 1 5-30349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30403-31048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30403-31 048 bp Feature: domain Description: GIIM Note: maturase Location: 31102-31333 bp Feature: domain Description: GIIM Note: maturase Location: 31 1 02-31 333 bp Feature: domain Description: HNHc Note: nucleases Location: 31543-31699 bp Feature: domain Description: HNHc Note: nucleases Location: 31 543-31 699 bp Feature: gene Location: 31754-32077 bp Feature: gene Location: 32128-32262 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JQVX01000043.1 Salmonella enterica strain CRJJGF_00093 SQ0141Contig47, whole genome shotgun sequence (86209 bp)
Overview 1 RT 1: 31629-36341 bp Neighborhood of RT #1 [31629, 36349] INT_P4_C RVT-Retrons PRK10473 Feature: gene Location: 31629-32138 bp Feature: domain Description: INT_P4_C Location: 31632-32067 bp Feature: domain Description: INT_P4_C Location: 31632 -32 067 bp Feature: gene Location: 32463-33425 bp Feature: gene Location: 33425-34360 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33536-34121 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33536-3412 1 bp Feature: gene Location: 34608-34817 bp Feature: gene Location: 35162-36349 bp Feature: domain Description: PRK10473 Location: 35165-36341 bp Feature: domain Description: PRK10473 Location: 35165-36341 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter)