myRT

myRT report for GCA_001644015.1_ASM164401v1

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Seq: LUUI01000010.1 Methylomonas lenta strain R-45370 contig_109_(1..17560), whole genome shotgun sequence (17560 bp)
Overview 1 RT 1: 5484-12423 bp Neighborhood of RT #1 [5484, 17417] COG3177 COG0610 dnaG RVT-UNC Feature: gene Location: 5484-6632 bp Ori: OAI21467.1 Feature: domain Description: COG3177 Location: 5604-6600 bp Feature: domain Description: COG31 77 Location: 5604-6600 bp Feature: gene Location: 6676-9810 bp Ori: OAI21468.1 Feature: domain Description: COG0610 Location: 6682-9721 bp Feature: domain Description: COG061 0 Location: 6682-9721 bp Feature: gene Location: 9831-17417 bp Ori: OAI21469.1 Feature: domain Description: dnaG Location: 9846-10929 bp Feature: domain Description: dnaG Location: 9846-1 0929 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 12177-12423 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 21 77-1 2423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), dnaG (TIGR01391), RVT-UG2/RVT-UG19/RVT-DGRs/RVT-UG25(RVT-UNC)

Seq: LUUI01000034.1 Methylomonas lenta strain R-45370 contig_130_(1..2300), whole genome shotgun sequence (2300 bp)
Overview 1 RT 1: 84-2299 bp Neighborhood of RT #1 [84, 2300] RVT-GII PinE WGR_MMR_like Feature: gene Location: 84-1358 bp Ori: OAI20640.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342-1011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342 -1011 bp Feature: gene Location: 1453-2082 bp Ori: OAI20641.1 Feature: domain Description: PinE Location: 1477-2029 bp Feature: domain Description: PinE Location: 1477-2 02 9 bp Feature: gene Location: 2086-2300 bp Ori: OAI20642.1 Feature: domain Description: WGR_MMR_like Location: 2098-2299 bp Feature: domain Description: WGR_MMR_like Location: 2 098-2 2 99 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PinE (COG1961), WGR_MMR_like (cd07996)

Seq: LUUI01000101.1 Methylomonas lenta strain R-45370 contig_39_(1..80766), whole genome shotgun sequence (80766 bp)
Overview 1 RT 1: 41250-46936 bp Neighborhood of RT #1 [41250, 46935] YfmG HRDC RVT-DGRs YfmG Feature: gene Location: 41250-44267 bp Ori: OAI15620.1 Feature: domain Description: YfmG Location: 43431-44112 bp Feature: domain Description: YfmG Location: 43 43 1-44112 bp Feature: gene Location: 44264-44776 bp Ori: OAI15621.1 Feature: domain Description: HRDC Location: 44531-44720 bp Feature: domain Description: HRDC Location: 4453 1-44720 bp Feature: gene Location: 44766-45806 bp Ori: OAI15622.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44976-45567 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44976-45567 bp Feature: gene Location: 45803-46117 bp Feature: gene Location: 46129-46935 bp Feature: domain Description: YfmG Location: 46267-46936 bp Feature: domain Description: YfmG Location: 46267-4693 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), HRDC (smart00341), RVT-DGRs

Seq: LUUI01000065.1 Methylomonas lenta strain R-45370 contig_159_(1..2180), whole genome shotgun sequence (2180 bp)
Overview 1 RT 1: 676-1771 bp Neighborhood of RT #1 [676, 1974] RVT-GII GIIM Feature: gene Location: 676-1974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 898-1516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 898-1516 bp Feature: domain Description: GIIM Note: maturase Location: 1570-1771 bp Feature: domain Description: GIIM Note: maturase Location: 1570-1771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)