myRT

myRT report for GCA_001644025.1_ASM164402v1

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Seq: LUUK01000204.1 Methylomonas koyamae strain R-45383 contig_71_(1..25715), whole genome shotgun sequence (25715 bp)
Overview 1 RT 1: 9468-13457 bp Neighborhood of RT #1 [9468, 13465] DUF3368 YfmG RVT-DGRs HRDC YfmG Feature: gene Location: 9468-9722 bp Ori: OAI14083.1 Feature: domain Description: DUF3368 Location: 9561-9657 bp Feature: domain Description: DUF3368 Location: 9561 -9657 bp Feature: gene Location: 9917-10780 bp Ori: OAI14084.1 Feature: domain Description: YfmG Location: 10040-10739 bp Feature: domain Description: YfmG Location: 1 0040-1 0739 bp Feature: gene Location: 11102-12109 bp Ori: OAI14085.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11315-11903 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 1 31 5-1 1 903 bp Feature: gene Location: 12084-12563 bp Ori: OAI14086.1 Feature: domain Description: HRDC Location: 12321-12516 bp Feature: domain Description: HRDC Location: 1 2321 -1 251 6 bp Feature: gene Location: 12716-13465 bp Feature: domain Description: YfmG Location: 12764-13457 bp Feature: domain Description: YfmG Location: 1 2764-1 3457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3368 (pfam11848), YfmG (COG1262), RVT-DGRs, HRDC (smart00341)

Seq: LUUK01000224.1 Methylomonas koyamae strain R-45383 contig_8_(1..18203), whole genome shotgun sequence (18203 bp)
Overview 1 RT 1: 12348-16614 bp Neighborhood of RT #1 [12348, 17609] HAD_L2-DEX RVT-UG3 RVT-UG8 Feature: gene Location: 12348-13109 bp Ori: OAI12039.1 Feature: domain Description: HAD_L2-DEX Location: 12447-13089 bp Feature: domain Description: HAD_L2 -DEX Location: 12 447-13089 bp Feature: gene Location: 13580-13840 bp Feature: gene Location: 14378-15646 bp Ori: OAI12041.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 14666-15164 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 14666-15164 bp Feature: gene Location: 15639-17609 bp Ori: OAI12042.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 16164-16614 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 16164-16614 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HAD_L2-DEX (cd02588), RVT-UG3, RVT-UG8

Seq: LUUK01000217.1 Methylomonas koyamae strain R-45383 contig_83_(1..28320), whole genome shotgun sequence (28320 bp)
Overview 1 RT 1: 4835-10260 bp Neighborhood of RT #1 [4835, 10260] bet_lambda RVT_N RVT-GII GIIM HNHc phage_rel_nuc Feature: gene Location: 4835-5851 bp Ori: OAI12750.1 Feature: domain Description: bet_lambda Location: 4928-5468 bp Feature: domain Description: bet_lambda Location: 4928-5468 bp Feature: gene Location: 5955-6305 bp Feature: gene Location: 7062-8786 bp Ori: OAI12771.1 Feature: domain Description: RVT_N Location: 7122-7365 bp Feature: domain Description: RVT_N Location: 7122-73 65 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7410-8079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7410-8079 bp Feature: domain Description: GIIM Note: maturase Location: 8130-8364 bp Feature: domain Description: GIIM Note: maturase Location: 813 0-83 64 bp Feature: domain Description: HNHc Note: nucleases Location: 8580-8739 bp Feature: domain Description: HNHc Note: nucleases Location: 8580-873 9 bp Feature: gene Location: 8883-9737 bp Ori: OAI12752.1 Feature: domain Description: phage_rel_nuc Location: 8904-9213 bp Feature: domain Description: phage_rel_nuc Location: 8904-9213 bp Feature: gene Location: 10045-10260 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT bet_lambda (TIGR01913), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), phage_rel_nuc (TIGR03033)