myRT

myRT report for GCA_001644035.1_ASM164403v1

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Seq: LUUG01000101.1 Methylomonas methanica strain R-45363 contig_66_(1..47454), whole genome shotgun sequence (47454 bp)
Overview 1 RT 1: 42267-46195 bp Neighborhood of RT #1 [42267, 46590] RVT-GII Feature: gene Location: 42267-43334 bp Feature: gene Location: 43685-44797 bp Feature: gene Location: 45097-46590 bp Ori: OAH99731.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45505-46195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45505-461 95 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LUUG01000007.1 Methylomonas methanica strain R-45363 contig_106_(1..30056), whole genome shotgun sequence (30056 bp)
Overview 1 RT 1: 24730-28699 bp Neighborhood of RT #1 [24730, 30056] HsdM RMtype1_S_SonII-TRD2-CR2_like RMtype1_S_SonII-TRD2-CR2_like RVT-UG5 Feature: gene Location: 24730-26367 bp Ori: OAI10561.1 Feature: domain Description: HsdM Location: 24757-26347 bp Feature: domain Description: HsdM Location: 2 4757-2 6347 bp Feature: gene Location: 26357-27664 bp Ori: OAI10562.1 Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 26369-26933 bp Feature: domain Description: RMtype1_S_SonII-TRD2 -CR2 _like Location: 2 6369-2 6933 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 27059-27614 bp Feature: domain Description: RMtype1_S_SonII-TRD2 -CR2 _like Location: 2 7059-2 7614 bp Feature: gene Location: 27679-30056 bp Ori: OAI10563.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 28207-28699 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 82 07-2 8699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RMtype1_S_SonII-TRD2-CR2_like (cd17246), RVT-UG5

Seq: LUUG01000105.1 Methylomonas methanica strain R-45363 contig_6_(1..94358), whole genome shotgun sequence (94358 bp)
Overview 1 RT 1: 9729-19473 bp Neighborhood of RT #1 [9729, 19838] PAS PAS_3 PRK11107 PRK11107 TMAO_torS RpfG RVT-GII GIIM DUF4953 Reprolysin_3 PKD Feature: gene Location: 9729-13781 bp Ori: OAH99032.1 Feature: domain Description: PAS Location: 10149-11055 bp Feature: domain Description: PAS Location: 10149-11055 bp Feature: domain Description: PAS_3 Location: 11154-11412 bp Feature: domain Description: PAS_3 Location: 11154-11412 bp Feature: domain Description: PRK11107 Location: 11502-12252 bp Feature: domain Description: PRK11107 Location: 11502-12252 bp Feature: domain Description: PRK11107 Location: 12276-12675 bp Feature: domain Description: PRK11107 Location: 12276-12675 bp Feature: domain Description: TMAO_torS Location: 12714-13440 bp Feature: domain Description: TMAO_torS Location: 12714-13 440 bp Feature: gene Location: 13784-14905 bp Ori: OAH99033.1 Feature: domain Description: RpfG Location: 13796-14891 bp Feature: domain Description: RpfG Location: 13 796-14891 bp Feature: gene Location: 15587-16837 bp Ori: OAH99034.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15791-16448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15791-16448 bp Feature: domain Description: GIIM Note: maturase Location: 16529-16745 bp Feature: domain Description: GIIM Note: maturase Location: 16529-16745 bp Feature: gene Location: 16970-17167 bp Feature: gene Location: 17541-19838 bp Ori: OAH99036.1 Feature: domain Description: DUF4953 Location: 18258-18414 bp Feature: domain Description: DUF4953 Location: 18258-18414 bp Feature: domain Description: Reprolysin_3 Location: 18429-18660 bp Feature: domain Description: Reprolysin_3 Location: 18429-18660 bp Feature: domain Description: PKD Location: 19242-19473 bp Feature: domain Description: PKD Location: 19242-19473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAS (smart00091), PAS_3 (pfam08447), PRK11107 (hybrid sensory histidine kinase BarA; Provisional), TMAO_torS (TIGR02956), RpfG (COG3437), RVT-GII, GIIM (pfam08388), DUF4953 (pfam16313), Reprolysin_3 (pfam13582), PKD (smart00089)

Seq: LUUG01000024.1 Methylomonas methanica strain R-45363 contig_121_(1..3771), whole genome shotgun sequence (3771 bp)
Overview 1 RT 1: 416-3521 bp Neighborhood of RT #1 [416, 3521] RVT-GII Feature: gene Location: 416-1722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 674-1364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 674 -1364 bp Feature: gene Location: 2088-3521 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII