myRT

myRT report for GCA_001644175.1_ASM164417v1

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Seq: LWQZ01000148.1 Escherichia coli strain BJ10 Contig_90, whole genome shotgun sequence (2280 bp)
Overview 1 RT 1: 1-1943 bp Neighborhood of RT #1 [1, 2188] RVT-GII GIIM Feature: gene Location: 1-371 bp Feature: gene Location: 286-711 bp Feature: gene Location: 680-2188 bp Ori: OAI31872.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 938-1670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 938-1 670 bp Feature: domain Description: GIIM Note: maturase Location: 1745-1943 bp Feature: domain Description: GIIM Note: maturase Location: 1 745-1 943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LWQZ01000072.1 Escherichia coli strain BJ10 Contig_21, whole genome shotgun sequence (91539 bp)
Overview 1 RT 1: 37912-48851 bp Neighborhood of RT #1 [37912, 48851] Psu RVT-UG7 PRK09692 DUF4062 HTH_XRE RVT-Retrons Resolvase Feature: gene Location: 37912-38484 bp Ori: OAI34627.1 Feature: domain Description: Psu Location: 37930-38467 bp Feature: domain Description: Psu Location: 37930-38467 bp Feature: gene Location: 38787-39527 bp Feature: gene Location: 39524-41152 bp Ori: OAI34629.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 39932-40361 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 39932 -40361 bp Feature: gene Location: 41145-42329 bp Ori: OAI34630.1 Feature: domain Description: PRK09692 Location: 41151-42306 bp Feature: domain Description: PRK09692 Location: 41151-42 306 bp Feature: gene Location: 43038-44219 bp Ori: OAI34631.1 Feature: domain Description: DUF4062 Location: 43053-43380 bp Feature: domain Description: DUF4062 Location: 43053-43380 bp Feature: gene Location: 44250-44711 bp Ori: OAI34632.1 Feature: domain Description: HTH_XRE Location: 44280-44448 bp Feature: domain Description: HTH_XRE Location: 442 80-44448 bp Feature: gene Location: 44951-45448 bp Feature: gene Location: 45585-47291 bp Ori: OAI34633.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45735-46332 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45735-46332 bp Feature: gene Location: 47559-48224 bp Ori: OAI34634.1 Feature: domain Description: Resolvase Location: 47580-47997 bp Feature: domain Description: Resolvase Location: 47580-47997 bp Feature: gene Location: 48507-48851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG7, PRK09692 (Integrase; provisional), DUF4062 (pfam13271), HTH_XRE (smart00530), RVT-Retrons, Resolvase (smart00857)