myRT

myRT report for GCA_001644195.2_ASM164419v2

Download annotations/find similar RTs

Seq: LWBL02000040.1 Bacillus marinisedimentorum strain NC2-31 contig40, whole genome shotgun sequence (149061 bp)
Overview 1 RT 1: 228-5182 bp Neighborhood of RT #1 [228, 5211] SLATT_5 RVT-UG17 HsdM RMtype1_S_MmaC7ORF19P_TRD1-CR1_like RMtype1_S_MmaC7ORF19P_TRD1-CR1_like Feature: gene Location: 228-815 bp Feature: domain Description: SLATT_5 Location: 258-795 bp Feature: domain Description: SLATT_5 Location: 258-795 bp Feature: gene Location: 820-2193 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1048-1636 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 048-1 636 bp Feature: gene Location: 2401-3966 bp Feature: domain Description: HsdM Location: 2458-3961 bp Feature: domain Description: HsdM Location: 2458-3961 bp Feature: gene Location: 3976-5211 bp Feature: domain Description: RMtype1_S_MmaC7ORF19P_TRD1-CR1_like Location: 4021-4579 bp Feature: domain Description: RMtype1 _S_MmaC7ORF1 9P_TRD1 -CR1 _like Location: 4021 -4579 bp Feature: domain Description: RMtype1_S_MmaC7ORF19P_TRD1-CR1_like Location: 4786-5182 bp Feature: domain Description: RMtype1 _S_MmaC7ORF1 9P_TRD1 -CR1 _like Location: 4786-51 82 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, HsdM (COG0286), RMtype1_S_MmaC7ORF19P_TRD1-CR1_like (cd17294)

Seq: LWBL02000074.1 Bacillus marinisedimentorum strain NC2-31 contig74, whole genome shotgun sequence (29950 bp)
Overview 1 RT 1: 2-2621 bp Neighborhood of RT #1 [2, 2698] RVT-GII GIIM SGNH_hydrolase YveK Feature: gene Location: 2-715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-2 69 bp Feature: domain Description: GIIM Note: maturase Location: 320-551 bp Feature: domain Description: GIIM Note: maturase Location: 32 0-551 bp Feature: gene Location: 797-1630 bp Feature: domain Description: SGNH_hydrolase Location: 1127-1607 bp Feature: domain Description: SGNH_hydrolase Location: 112 7-1607 bp Feature: gene Location: 1949-2698 bp Feature: domain Description: YveK Location: 1952-2621 bp Feature: domain Description: YveK Location: 1952 -2 62 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), SGNH_hydrolase (cl01053), YveK (COG3944)

Seq: LWBL02000091.1 Bacillus marinisedimentorum strain NC2-31 contig91, whole genome shotgun sequence (1131 bp)
Overview 1 RT 1: 78-966 bp Neighborhood of RT #1 [78, 1130] RVT-GII GIIM Feature: gene Location: 78-1130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81-684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81-684 bp Feature: domain Description: GIIM Note: maturase Location: 735-966 bp Feature: domain Description: GIIM Note: maturase Location: 73 5-966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)