myRT

myRT report for GCA_001645605.1_ASM164560v1

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Seq: LVHG01000025.1 Variovorax paradoxus strain KB5 contig_16, whole genome shotgun sequence (188125 bp)
Overview 1 RT 1: 10954-15789 bp Neighborhood of RT #1 [10954, 15800] fabG RVT-GII GIIM IS5 GntR Feature: gene Location: 10954-11709 bp Feature: domain Description: fabG Location: 10960-11692 bp Feature: domain Description: fabG Location: 1 0960-1 1 692 bp Feature: gene Location: 11963-12468 bp Feature: gene Location: 12989-14256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13202-13859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3202-1 3859 bp Feature: domain Description: GIIM Note: maturase Location: 13940-14156 bp Feature: domain Description: GIIM Note: maturase Location: 1 3940-1 41 56 bp Feature: gene Location: 14319-14777 bp Feature: domain Description: IS5 Location: 14322-14760 bp Feature: domain Description: IS5 Location: 1 4322-1 4760 bp Feature: gene Location: 15105-15800 bp Feature: domain Description: GntR Location: 15150-15789 bp Feature: domain Description: GntR Location: 1 51 50-1 5789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fabG (PRK12825), RVT-GII, GIIM (pfam08388), IS5 (COG3039), GntR (pfam00392)

Seq: LVHG01000054.1 Variovorax paradoxus strain KB5 contig_42, whole genome shotgun sequence (123876 bp)
Overview 1 RT 1: 91375-100702 bp Neighborhood of RT #1 [91375, 100737] HEAT_2 HEAT_2 RVT-Retrons Acetyltransf_1 Acetyltransf_1 RIO1 Feature: gene Location: 91375-94527 bp Feature: domain Description: HEAT_2 Location: 91708-91924 bp Feature: domain Description: HEAT_2 Location: 91708-9192 4 bp Feature: domain Description: HEAT_2 Location: 92899-93121 bp Feature: domain Description: HEAT_2 Location: 92 899-9312 1 bp Feature: gene Location: 94524-96230 bp Feature: gene Location: 96508-98457 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 97084-97702 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 97084-97702 bp Feature: gene Location: 98789-99889 bp Feature: domain Description: Acetyltransf_1 Location: 99119-99206 bp Feature: domain Description: Acetyltransf_1 Location: 99119-992 06 bp Feature: domain Description: Acetyltransf_1 Location: 99479-99737 bp Feature: domain Description: Acetyltransf_1 Location: 99479-99737 bp Feature: gene Location: 99886-100737 bp Feature: domain Description: RIO1 Location: 99901-100702 bp Feature: domain Description: RIO1 Location: 99901-100702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEAT_2 (pfam13646), RVT-Retrons, Acetyltransf_1 (pfam00583), RIO1 (pfam01163)