myRT

myRT report for GCA_001648935.1_ASM164893v1

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Seq: LVIO01000061.1 Shigella flexneri strain GX4s05 NODE_155, whole genome shotgun sequence (7609 bp)
Overview 1 RT 1: 1308-4373 bp Neighborhood of RT #1 [1308, 4387] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1308-1694 bp Feature: domain Description: PHA02517 Location: 1311-1692 bp Feature: domain Description: PHA0251 7 Location: 1 31 1 -1 692 bp Feature: gene Location: 1788-1919 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1800-1893 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 800-1 893 bp Feature: gene Location: 2480-3613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2582-3236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2582-3236 bp Feature: domain Description: GIIM Note: maturase Location: 3314-3536 bp Feature: domain Description: GIIM Note: maturase Location: 331 4-3536 bp Feature: gene Location: 3729-3875 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3741-3852 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3741 -3852 bp Feature: gene Location: 3902-4387 bp Feature: domain Description: COG3547 Location: 3920-4373 bp Feature: domain Description: COG3547 Location: 3920-4373 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: LVIO01000081.1 Shigella flexneri strain GX4s05 NODE_173, whole genome shotgun sequence (5984 bp)
Overview 1 RT 1: 2918-5619 bp Neighborhood of RT #1 [2918, 5639] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2918-3073 bp Feature: gene Location: 3099-3470 bp Feature: domain Description: GIIM Note: maturase Location: 3177-3396 bp Feature: domain Description: GIIM Note: maturase Location: 3177-3396 bp Feature: gene Location: 3478-4281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3778-4273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3778-42 73 bp Feature: gene Location: 4294-4494 bp Feature: domain Description: Tra5 Location: 4303-4477 bp Feature: domain Description: Tra5 Location: 4303-4477 bp Feature: gene Location: 4890-5639 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4965-5619 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 4965-5619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: LVIO01000170.1 Shigella flexneri strain GX4s05 NODE_254, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 66-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173 -13 71 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)