myRT

myRT report for GCA_001648955.1_ASM164895v1

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Seq: LVIJ01000167.1 Shigella flexneri strain BJ4s05 NODE_167, whole genome shotgun sequence (6016 bp)
Overview 1 RT 1: 3-2852 bp Neighborhood of RT #1 [3, 2866] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 3-173 bp Feature: domain Description: PHA02517 Location: 6-171 bp Feature: domain Description: PHA0251 7 Location: 6-1 71 bp Feature: gene Location: 267-398 bp Feature: domain Description: DDE_Tnp_IS66 Location: 279-372 bp Feature: domain Description: DDE_Tnp_IS66 Location: 279-372 bp Feature: gene Location: 875-2092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1061-1715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 061 -1 71 5 bp Feature: domain Description: GIIM Note: maturase Location: 1793-2015 bp Feature: domain Description: GIIM Note: maturase Location: 1 793-201 5 bp Feature: gene Location: 2208-2354 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2220-2331 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2220-2331 bp Feature: gene Location: 2381-2866 bp Feature: domain Description: COG3547 Location: 2399-2852 bp Feature: domain Description: COG3547 Location: 2399-2852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), DDE_Tnp_IS66 (pfam03050), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: LVIJ01000032.1 Shigella flexneri strain BJ4s05 NODE_32, whole genome shotgun sequence (35782 bp)
Overview 1 RT 1: 28702-35736 bp Neighborhood of RT #1 [28702, 35736] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 28702-32820 bp Feature: domain Description: ESPR Location: 28705-28774 bp Feature: domain Description: ESPR Location: 2 8705-2 8774 bp Feature: domain Description: Peptidase_S6 Location: 28855-31027 bp Feature: domain Description: Peptidase_S6 Location: 2 8855-3102 7 bp Feature: domain Description: autotrans_barl Location: 31591-32818 bp Feature: domain Description: autotrans_barl Location: 31591-32 818 bp Feature: gene Location: 32985-33371 bp Feature: domain Description: PHA02517 Location: 32988-33369 bp Feature: domain Description: PHA02 517 Location: 32 988-33369 bp Feature: gene Location: 33548-35071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33821-34553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3382 1-34553 bp Feature: domain Description: GIIM Note: maturase Location: 34628-34826 bp Feature: domain Description: GIIM Note: maturase Location: 3462 8-3482 6 bp Feature: gene Location: 35365-35736 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)