myRT

myRT report for GCA_001649015.1_ASM164901v1

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Seq: LVIP01000165.1 Shigella flexneri strain HN4s01 NODE_165, whole genome shotgun sequence (6219 bp)
Overview 1 RT 1: 3223-5876 bp Neighborhood of RT #1 [3223, 5876] COG3547 RVT-GII GIIM Feature: gene Location: 3223-3708 bp Feature: domain Description: COG3547 Location: 3241-3694 bp Feature: domain Description: COG3547 Location: 3241 -3694 bp Feature: gene Location: 3804-3971 bp Feature: gene Location: 3997-5214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4183-4837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 83-4837 bp Feature: domain Description: GIIM Note: maturase Location: 4915-5137 bp Feature: domain Description: GIIM Note: maturase Location: 491 5-51 37 bp Feature: gene Location: 5225-5608 bp Feature: gene Location: 5682-5876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: LVIP01000178.1 Shigella flexneri strain HN4s01 NODE_178, whole genome shotgun sequence (5689 bp)
Overview 1 RT 1: 2623-5324 bp Neighborhood of RT #1 [2623, 5344] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2623-2778 bp Feature: gene Location: 2804-3175 bp Feature: domain Description: GIIM Note: maturase Location: 2882-3101 bp Feature: domain Description: GIIM Note: maturase Location: 2 882 -3101 bp Feature: gene Location: 3183-3986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3483-3978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3483-3978 bp Feature: gene Location: 3999-4199 bp Feature: domain Description: Tra5 Location: 4008-4182 bp Feature: domain Description: Tra5 Location: 4008-4182 bp Feature: gene Location: 4595-5344 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4670-5324 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 4670-532 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: LVIP01000037.1 Shigella flexneri strain HN4s01 NODE_37, whole genome shotgun sequence (35784 bp)
Overview 1 RT 1: 3-7153 bp Neighborhood of RT #1 [3, 7155] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 3-194 bp Feature: domain Description: PHA02517 Location: 6-129 bp Feature: domain Description: PHA02517 Location: 6-129 bp Feature: gene Location: 786-2309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1059-1791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1059-1791 bp Feature: domain Description: GIIM Note: maturase Location: 1866-2064 bp Feature: domain Description: GIIM Note: maturase Location: 1866-2064 bp Feature: gene Location: 2486-2872 bp Feature: domain Description: PHA02517 Location: 2489-2870 bp Feature: domain Description: PHA02517 Location: 2489-2870 bp Feature: gene Location: 3037-7155 bp Feature: domain Description: ESPR Location: 3040-3109 bp Feature: domain Description: ESPR Location: 3 040-3 109 bp Feature: domain Description: Peptidase_S6 Location: 3190-5362 bp Feature: domain Description: Peptidase_S6 Location: 3 190-53 62 bp Feature: domain Description: autotrans_barl Location: 5926-7153 bp Feature: domain Description: autotrans_barl Location: 5926-7153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)