myRT

myRT report for GCA_001649025.1_ASM164902v1

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Seq: LVIQ01000017.1 Shigella flexneri strain HN4s02 NODE_17, whole genome shotgun sequence (56422 bp)
Overview 1 RT 1: 4663-9120 bp Neighborhood of RT #1 [4663, 9120] DUF3560 AdoMet_MTases RVT_N RVT-GII GIIM HNHc Feature: gene Location: 4663-6024 bp Feature: domain Description: DUF3560 Location: 4930-5287 bp Feature: domain Description: DUF3560 Location: 4930-5287 bp Feature: gene Location: 6071-6634 bp Feature: domain Description: AdoMet_MTases Location: 6233-6530 bp Feature: domain Description: AdoMet_MTases Location: 6233-6530 bp Feature: gene Location: 6991-8658 bp Feature: RT Description: RVT_N Location: 7039-7276 bp Feature: RT Description: RVT_N Location: 7039-7276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7327-7969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7327-7969 bp Feature: domain Description: GIIM Note: maturase Location: 8020-8254 bp Feature: domain Description: GIIM Note: maturase Location: 8020-8254 bp Feature: domain Description: HNHc Note: nucleases Location: 8464-8623 bp Feature: domain Description: HNHc Note: nucleases Location: 8464-8623 bp Feature: gene Location: 8695-8841 bp Feature: gene Location: 8938-9120 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3560 (pfam12083), AdoMet_MTases (cl17173), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LVIQ01000170.1 Shigella flexneri strain HN4s02 NODE_170, whole genome shotgun sequence (6220 bp)
Overview 1 RT 1: 3223-5877 bp Neighborhood of RT #1 [3223, 5877] COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 3223-3708 bp Feature: domain Description: COG3547 Location: 3241-3694 bp Feature: domain Description: COG3547 Location: 32 41-3694 bp Feature: gene Location: 3804-3971 bp Feature: gene Location: 3997-4524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4003-4147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4003-4147 bp Feature: domain Description: GIIM Note: maturase Location: 4225-4447 bp Feature: domain Description: GIIM Note: maturase Location: 42 2 5-4447 bp Feature: gene Location: 4562-5215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4748-5204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4748-52 04 bp Feature: gene Location: 5226-5609 bp Feature: gene Location: 5683-5877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: LVIQ01000204.1 Shigella flexneri strain HN4s02 NODE_204, whole genome shotgun sequence (4142 bp)
Overview 1 RT 1: 1-1934 bp Neighborhood of RT #1 [1, 1934] Tra5 RVT-GII GIIM Feature: gene Location: 1-144 bp Feature: domain Description: Tra5 Location: 4-127 bp Feature: domain Description: Tra5 Location: 4-127 bp Feature: gene Location: 157-960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-952 bp Feature: gene Location: 1013-1339 bp Feature: domain Description: GIIM Note: maturase Location: 1046-1265 bp Feature: domain Description: GIIM Note: maturase Location: 1046-1265 bp Feature: gene Location: 1692-1934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), Tra5 (COG2801), RVT-GII

Seq: LVIQ01000038.1 Shigella flexneri strain HN4s02 NODE_38, whole genome shotgun sequence (35782 bp)
Overview 1 RT 1: 1-7151 bp Neighborhood of RT #1 [1, 7153] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1-192 bp Feature: domain Description: PHA02517 Location: 4-127 bp Feature: domain Description: PHA02517 Location: 4 -127 bp Feature: gene Location: 784-2307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: domain Description: GIIM Note: maturase Location: 1864-2062 bp Feature: domain Description: GIIM Note: maturase Location: 1864 -2062 bp Feature: gene Location: 2484-2870 bp Feature: domain Description: PHA02517 Location: 2487-2868 bp Feature: domain Description: PHA02517 Location: 24 87-2868 bp Feature: gene Location: 3035-7153 bp Feature: domain Description: ESPR Location: 3038-3107 bp Feature: domain Description: ESPR Location: 3038-3107 bp Feature: domain Description: Peptidase_S6 Location: 3188-5360 bp Feature: domain Description: Peptidase_S6 Location: 3188-5360 bp Feature: domain Description: autotrans_barl Location: 5924-7151 bp Feature: domain Description: autotrans_barl Location: 5924 -7151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)