myRT

myRT report for GCA_001649035.1_ASM164903v1

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Seq: LVIR01000175.1 Shigella flexneri strain HN4s03 NODE_175, whole genome shotgun sequence (6139 bp)
Overview 1 RT 1: 3223-5876 bp Neighborhood of RT #1 [3223, 5876] COG3547 RVT-GII GIIM Feature: gene Location: 3223-3708 bp Feature: domain Description: COG3547 Location: 3241-3694 bp Feature: domain Description: COG3547 Location: 3241 -3694 bp Feature: gene Location: 3804-3971 bp Feature: gene Location: 3997-5214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4183-4837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 83-4837 bp Feature: domain Description: GIIM Note: maturase Location: 4915-5137 bp Feature: domain Description: GIIM Note: maturase Location: 491 5-51 37 bp Feature: gene Location: 5225-5608 bp Feature: gene Location: 5682-5876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: LVIR01000187.1 Shigella flexneri strain HN4s03 NODE_187, whole genome shotgun sequence (5609 bp)
Overview 1 RT 1: 346-3481 bp Neighborhood of RT #1 [346, 3481] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 346-1095 bp Feature: domain Description: PAP2_acid_phosphatase Location: 421-1075 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 42 1-1075 bp Feature: gene Location: 1491-1691 bp Feature: domain Description: Tra5 Location: 1494-1674 bp Feature: domain Description: Tra5 Location: 1494-1674 bp Feature: gene Location: 1704-2507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2004-2499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 004-2 499 bp Feature: gene Location: 2560-2886 bp Feature: domain Description: GIIM Note: maturase Location: 2593-2812 bp Feature: domain Description: GIIM Note: maturase Location: 2 593-2 812 bp Feature: gene Location: 3239-3481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: LVIR01000035.1 Shigella flexneri strain HN4s03 NODE_35, whole genome shotgun sequence (37224 bp)
Overview 1 RT 1: 1214-8626 bp Neighborhood of RT #1 [1214, 8628] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1214-1342 bp Feature: gene Location: 1428-1667 bp Feature: domain Description: PHA02517 Location: 1431-1602 bp Feature: domain Description: PHA02517 Location: 143 1-1602 bp Feature: gene Location: 2259-3782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2532-3264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253 2-3 264 bp Feature: domain Description: GIIM Note: maturase Location: 3339-3537 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 3 9-3 53 7 bp Feature: gene Location: 3959-4345 bp Feature: domain Description: PHA02517 Location: 3962-4343 bp Feature: domain Description: PHA02517 Location: 3 962-43 43 bp Feature: gene Location: 4510-8628 bp Feature: domain Description: ESPR Location: 4513-4582 bp Feature: domain Description: ESPR Location: 4513 -4582 bp Feature: domain Description: Peptidase_S6 Location: 4663-6835 bp Feature: domain Description: Peptidase_S6 Location: 4663 -683 5 bp Feature: domain Description: autotrans_barl Location: 7399-8626 bp Feature: domain Description: autotrans_barl Location: 73 99-8626 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)