myRT

myRT report for GCA_001649045.1_ASM164904v1

Download annotations/find similar RTs

Seq: LVIS01000125.1 Shigella flexneri strain HN4s04 NODE_125, whole genome shotgun sequence (10642 bp)
Overview 1 RT 1: 8280-10638 bp Neighborhood of RT #1 [8280, 10640] RVT_N RVT-GII PHA02517 Feature: gene Location: 8280-8873 bp Feature: gene Location: 9447-9875 bp Feature: RT Description: RVT_N Location: 9495-9732 bp Feature: RT Description: RVT_N Location: 9495-9732 bp Feature: gene Location: 9901-10038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9907-10003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9907-1 0003 bp Feature: gene Location: 10041-10640 bp Feature: domain Description: PHA02517 Location: 10044-10638 bp Feature: domain Description: PHA0251 7 Location: 1 0044-1 0638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT_N (pfam13655), RVT-GII

Seq: LVIS01000167.1 Shigella flexneri strain HN4s04 NODE_167, whole genome shotgun sequence (6517 bp)
Overview 1 RT 1: 3223-5876 bp Neighborhood of RT #1 [3223, 5876] COG3547 RVT-GII GIIM Feature: gene Location: 3223-3708 bp Feature: domain Description: COG3547 Location: 3241-3694 bp Feature: domain Description: COG3547 Location: 32 41-3694 bp Feature: gene Location: 3804-3971 bp Feature: gene Location: 3997-5214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4183-4837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4183-4837 bp Feature: domain Description: GIIM Note: maturase Location: 4915-5137 bp Feature: domain Description: GIIM Note: maturase Location: 4915-5137 bp Feature: gene Location: 5225-5608 bp Feature: gene Location: 5682-5876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: LVIS01000210.1 Shigella flexneri strain HN4s04 NODE_210, whole genome shotgun sequence (4069 bp)
Overview 1 RT 1: 1-1934 bp Neighborhood of RT #1 [1, 1934] Tra5 RVT-GII GIIM Feature: gene Location: 1-144 bp Feature: domain Description: Tra5 Location: 4-127 bp Feature: domain Description: Tra5 Location: 4-127 bp Feature: gene Location: 157-960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-952 bp Feature: gene Location: 1013-1339 bp Feature: domain Description: GIIM Note: maturase Location: 1046-1265 bp Feature: domain Description: GIIM Note: maturase Location: 1046-1265 bp Feature: gene Location: 1692-1934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), Tra5 (COG2801), RVT-GII

Seq: LVIS01000265.1 Shigella flexneri strain HN4s04 NODE_265, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)