myRT

myRT report for GCA_001649095.1_ASM164909v1

Download annotations/find similar RTs

Seq: LVIT01000162.1 Shigella flexneri strain HN4s05 NODE_162, whole genome shotgun sequence (6343 bp)
Overview 1 RT 1: 3223-5876 bp Neighborhood of RT #1 [3223, 5876] COG3547 RVT-GII GIIM Feature: gene Location: 3223-3708 bp Feature: domain Description: COG3547 Location: 3241-3694 bp Feature: domain Description: COG3547 Location: 3241 -3694 bp Feature: gene Location: 3804-3971 bp Feature: gene Location: 3997-5214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4183-4837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 83-4837 bp Feature: domain Description: GIIM Note: maturase Location: 4915-5137 bp Feature: domain Description: GIIM Note: maturase Location: 491 5-51 37 bp Feature: gene Location: 5225-5608 bp Feature: gene Location: 5682-5876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: LVIT01000192.1 Shigella flexneri strain HN4s05 NODE_192, whole genome shotgun sequence (4426 bp)
Overview 1 RT 1: 1-1934 bp Neighborhood of RT #1 [1, 1934] Tra5 RVT-GII GIIM Feature: gene Location: 1-144 bp Feature: domain Description: Tra5 Location: 4-127 bp Feature: domain Description: Tra5 Location: 4-12 7 bp Feature: gene Location: 157-960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-952 bp Feature: gene Location: 1013-1339 bp Feature: domain Description: GIIM Note: maturase Location: 1046-1265 bp Feature: domain Description: GIIM Note: maturase Location: 1046-12 65 bp Feature: gene Location: 1692-1934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), Tra5 (COG2801), RVT-GII

Seq: LVIT01000252.1 Shigella flexneri strain HN4s05 NODE_253, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 66-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173 -13 71 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)