myRT

myRT report for GCA_001649105.1_ASM164910v1

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Seq: LVIU01000070.1 Shigella flexneri strain HN4s06 NODE_163, whole genome shotgun sequence (6524 bp)
Overview 1 RT 1: 3528-6181 bp Neighborhood of RT #1 [3528, 6181] COG3547 RVT-GII GIIM Feature: gene Location: 3528-4013 bp Feature: domain Description: COG3547 Location: 3546-3999 bp Feature: domain Description: COG3547 Location: 3546-3999 bp Feature: gene Location: 4109-4276 bp Feature: gene Location: 4302-5519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4488-5142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4488-51 42 bp Feature: domain Description: GIIM Note: maturase Location: 5220-5442 bp Feature: domain Description: GIIM Note: maturase Location: 5220-5442 bp Feature: gene Location: 5530-5913 bp Feature: gene Location: 5987-6181 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: LVIU01000086.1 Shigella flexneri strain HN4s06 NODE_178, whole genome shotgun sequence (5689 bp)
Overview 1 RT 1: 346-3481 bp Neighborhood of RT #1 [346, 3481] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 346-1095 bp Feature: domain Description: PAP2_acid_phosphatase Location: 421-1075 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 42 1-1075 bp Feature: gene Location: 1491-1691 bp Feature: domain Description: Tra5 Location: 1500-1674 bp Feature: domain Description: Tra5 Location: 1500-1674 bp Feature: gene Location: 1704-2507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2004-2499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 004-2 499 bp Feature: gene Location: 2560-2886 bp Feature: domain Description: GIIM Note: maturase Location: 2593-2812 bp Feature: domain Description: GIIM Note: maturase Location: 2 593-2 812 bp Feature: gene Location: 3239-3481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: LVIU01000174.1 Shigella flexneri strain HN4s06 NODE_258, whole genome shotgun sequence (2271 bp)
Overview 1 RT 1: 92-2268 bp Neighborhood of RT #1 [92, 2268] RVT-GII GIIM Feature: gene Location: 92-1615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-1097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 65-1097 bp Feature: domain Description: GIIM Note: maturase Location: 1172-1370 bp Feature: domain Description: GIIM Note: maturase Location: 1172-13 70 bp Feature: gene Location: 1909-2268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)