myRT

myRT report for GCA_001649215.1_ASM164921v1

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Seq: LVIG01000165.1 Shigella flexneri strain BJ4s02 NODE_165, whole genome shotgun sequence (6219 bp)
Overview 1 RT 1: 3223-5876 bp Neighborhood of RT #1 [3223, 5876] COG3547 RVT-GII GIIM Feature: gene Location: 3223-3708 bp Feature: domain Description: COG3547 Location: 3241-3694 bp Feature: domain Description: COG3547 Location: 3241 -3694 bp Feature: gene Location: 3804-3971 bp Feature: gene Location: 3997-5214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4183-4837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 83-4837 bp Feature: domain Description: GIIM Note: maturase Location: 4915-5137 bp Feature: domain Description: GIIM Note: maturase Location: 491 5-51 37 bp Feature: gene Location: 5225-5608 bp Feature: gene Location: 5682-5876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: LVIG01000195.1 Shigella flexneri strain BJ4s02 NODE_196, whole genome shotgun sequence (4426 bp)
Overview 1 RT 1: 1-1934 bp Neighborhood of RT #1 [1, 1934] Tra5 RVT-GII GIIM Feature: gene Location: 1-144 bp Feature: domain Description: Tra5 Location: 4-127 bp Feature: domain Description: Tra5 Location: 4-12 7 bp Feature: gene Location: 157-960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-952 bp Feature: gene Location: 1013-1339 bp Feature: domain Description: GIIM Note: maturase Location: 1046-1265 bp Feature: domain Description: GIIM Note: maturase Location: 1046-12 65 bp Feature: gene Location: 1692-1934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), Tra5 (COG2801), RVT-GII

Seq: LVIG01000035.1 Shigella flexneri strain BJ4s02 NODE_35, whole genome shotgun sequence (35813 bp)
Overview 1 RT 1: 1-7226 bp Neighborhood of RT #1 [1, 7228] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1-267 bp Feature: domain Description: PHA02517 Location: 4-202 bp Feature: domain Description: PHA02517 Location: 4-202 bp Feature: gene Location: 859-2382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1132-1864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113 2-1864 bp Feature: domain Description: GIIM Note: maturase Location: 1939-2137 bp Feature: domain Description: GIIM Note: maturase Location: 193 9-213 7 bp Feature: gene Location: 2559-2945 bp Feature: domain Description: PHA02517 Location: 2562-2943 bp Feature: domain Description: PHA02517 Location: 2562-2943 bp Feature: gene Location: 3110-7228 bp Feature: domain Description: ESPR Location: 3113-3182 bp Feature: domain Description: ESPR Location: 3 113 -3 182 bp Feature: domain Description: Peptidase_S6 Location: 3263-5435 bp Feature: domain Description: Peptidase_S6 Location: 3 263 -543 5 bp Feature: domain Description: autotrans_barl Location: 5999-7226 bp Feature: domain Description: autotrans_barl Location: 5999-7226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)