myRT

myRT report for GCA_001649255.1_ASM164925v1

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Seq: LVII01000035.1 Shigella flexneri strain BJ4s04 NODE_35, whole genome shotgun sequence (36469 bp)
Overview 1 RT 1: 279-7691 bp Neighborhood of RT #1 [279, 7693] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 279-407 bp Feature: gene Location: 493-732 bp Feature: domain Description: PHA02517 Location: 496-667 bp Feature: domain Description: PHA0251 7 Location: 496-667 bp Feature: gene Location: 1324-2847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1597-2329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 597-2329 bp Feature: domain Description: GIIM Note: maturase Location: 2404-2602 bp Feature: domain Description: GIIM Note: maturase Location: 2404-2602 bp Feature: gene Location: 3024-3410 bp Feature: domain Description: PHA02517 Location: 3027-3408 bp Feature: domain Description: PHA0251 7 Location: 3027-3408 bp Feature: gene Location: 3575-7693 bp Feature: domain Description: ESPR Location: 3578-3647 bp Feature: domain Description: ESPR Location: 3578-3647 bp Feature: domain Description: Peptidase_S6 Location: 3728-5900 bp Feature: domain Description: Peptidase_S6 Location: 3728-5900 bp Feature: domain Description: autotrans_barl Location: 6464-7691 bp Feature: domain Description: autotrans_barl Location: 6464-7691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed)

Seq: LVII01000082.1 Shigella flexneri strain BJ4s04 NODE_82, whole genome shotgun sequence (17310 bp)
Overview 1 RT 1: 14314-16967 bp Neighborhood of RT #1 [14314, 16967] COG3547 RVT-GII GIIM Feature: gene Location: 14314-14799 bp Feature: domain Description: COG3547 Location: 14332-14785 bp Feature: domain Description: COG3547 Location: 14332 -14785 bp Feature: gene Location: 14895-15062 bp Feature: gene Location: 15088-16305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15274-15928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152 74-1592 8 bp Feature: domain Description: GIIM Note: maturase Location: 16006-16228 bp Feature: domain Description: GIIM Note: maturase Location: 16006-162 2 8 bp Feature: gene Location: 16316-16699 bp Feature: gene Location: 16773-16967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: LVII01000098.1 Shigella flexneri strain BJ4s04 NODE_98, whole genome shotgun sequence (13303 bp)
Overview 1 RT 1: 2564-5265 bp Neighborhood of RT #1 [2564, 5285] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2564-2719 bp Feature: gene Location: 2745-3116 bp Feature: domain Description: GIIM Note: maturase Location: 2823-3042 bp Feature: domain Description: GIIM Note: maturase Location: 2823 -3 042 bp Feature: gene Location: 3124-3927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3424-3919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 424-3 919 bp Feature: gene Location: 3940-4140 bp Feature: domain Description: Tra5 Location: 3949-4123 bp Feature: domain Description: Tra5 Location: 3 949-4123 bp Feature: gene Location: 4536-5285 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4611-5265 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4611-5265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)