myRT

myRT report for GCA_001649375.1_ASM164937v1

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Seq: LVJC01000165.1 Shigella flexneri strain SH4s02 NODE_165, whole genome shotgun sequence (6085 bp)
Overview 1 RT 1: 3223-5876 bp Neighborhood of RT #1 [3223, 5876] COG3547 RVT-GII GIIM Feature: gene Location: 3223-3708 bp Feature: domain Description: COG3547 Location: 3241-3694 bp Feature: domain Description: COG3547 Location: 3241 -3694 bp Feature: gene Location: 3804-3971 bp Feature: gene Location: 3997-5214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4183-4837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 83-4837 bp Feature: domain Description: GIIM Note: maturase Location: 4915-5137 bp Feature: domain Description: GIIM Note: maturase Location: 491 5-51 37 bp Feature: gene Location: 5225-5608 bp Feature: gene Location: 5682-5876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: LVJC01000172.1 Shigella flexneri strain SH4s02 NODE_172, whole genome shotgun sequence (5630 bp)
Overview 1 RT 1: 346-3481 bp Neighborhood of RT #1 [346, 3481] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 346-1095 bp Feature: domain Description: PAP2_acid_phosphatase Location: 421-1075 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 42 1-1075 bp Feature: gene Location: 1491-1691 bp Feature: domain Description: Tra5 Location: 1500-1674 bp Feature: domain Description: Tra5 Location: 1500-1674 bp Feature: gene Location: 1704-2507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2004-2499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 004-2 499 bp Feature: gene Location: 2560-2886 bp Feature: domain Description: GIIM Note: maturase Location: 2593-2812 bp Feature: domain Description: GIIM Note: maturase Location: 2 593-2 812 bp Feature: gene Location: 3239-3481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: LVJC01000036.1 Shigella flexneri strain SH4s02 NODE_36, whole genome shotgun sequence (35835 bp)
Overview 1 RT 1: 1-7151 bp Neighborhood of RT #1 [1, 7153] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1-192 bp Feature: domain Description: PHA02517 Location: 4-127 bp Feature: domain Description: PHA02517 Location: 4-127 bp Feature: gene Location: 784-2307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: domain Description: GIIM Note: maturase Location: 1864-2062 bp Feature: domain Description: GIIM Note: maturase Location: 1864-2062 bp Feature: gene Location: 2484-2870 bp Feature: domain Description: PHA02517 Location: 2487-2868 bp Feature: domain Description: PHA02517 Location: 2487-2868 bp Feature: gene Location: 3035-7153 bp Feature: domain Description: ESPR Location: 3038-3107 bp Feature: domain Description: ESPR Location: 3 03 8-3 107 bp Feature: domain Description: Peptidase_S6 Location: 3188-5360 bp Feature: domain Description: Peptidase_S6 Location: 3 188-53 60 bp Feature: domain Description: autotrans_barl Location: 5924-7151 bp Feature: domain Description: autotrans_barl Location: 5924-7151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)