myRT

myRT report for GCA_001650175.1_ASM165017v1

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Seq: KV441840.1 Opitutaceae bacterium TSB47 genomic scaffold Scaffold2, whole genome shotgun sequence (2011814 bp)
Overview 1 RT 1: 195759-200510 bp 2 RT 2: 471717-480749 bp 3 RT 3: 1313979-1318445 bp Neighborhood of RT #1 [195759, 200575] AbiEii COG5340 RVT-GII GIIM COG3547 Neighborhood of RT #2 [471717, 480749] DUF2341 Laminin_G_3 TolQ FhaC RVT-UNC COG4625 COG4625 autotrns_rpt autotrns_rpt Autotransporter Neighborhood of RT #3 [1313979, 1318489] DEDD_Tnp_IS110 RVT-GII fabG VOC_like Feature: gene Location: 195759-196577 bp Ori: OAM88997.1 Feature: domain Description: AbiEii Location: 195786-196455 bp Feature: domain Description: AbiEii Location: 1 95786-1 96455 bp Feature: gene Location: 196660-197256 bp Ori: OAM88998.1 Feature: domain Description: COG5340 Location: 196750-197203 bp Feature: domain Description: COG5340 Location: 1 96750-1 97203 bp Feature: gene Location: 197814-199055 bp Ori: OAM88999.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198024-198681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 98024-1 98681 bp Feature: domain Description: GIIM Note: maturase Location: 198762-198981 bp Feature: domain Description: GIIM Note: maturase Location: 1 98762-1 98981 bp Feature: gene Location: 199523-200575 bp Ori: OAM89000.1 Feature: domain Description: COG3547 Location: 199559-200510 bp Feature: domain Description: COG3547 Location: 1 99559-20051 0 bp Feature: gene Location: 471717-473579 bp Ori: OAM90182.1 Feature: domain Description: DUF2341 Location: 471930-472116 bp Feature: domain Description: DUF2341 Location: 471 930-4721 1 6 bp Feature: domain Description: Laminin_G_3 Location: 472269-472692 bp Feature: domain Description: Laminin_G_3 Location: 472269-472692 bp Feature: domain Description: TolQ Location: 473085-473520 bp Feature: domain Description: TolQ Location: 473085-473520 bp Feature: gene Location: 473612-475147 bp Ori: OAM90183.1 Feature: domain Description: FhaC Location: 473645-475136 bp Feature: domain Description: FhaC Location: 473645-4751 36 bp Feature: gene Location: 475388-476029 bp Ori: OAM90096.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 475730-476021 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 475730-476021 bp Feature: gene Location: 476124-480305 bp Ori: OAM90097.1 Feature: domain Description: COG4625 Location: 476685-477006 bp Feature: domain Description: COG4625 Location: 476685-477006 bp Feature: domain Description: COG4625 Location: 477546-477891 bp Feature: domain Description: COG4625 Location: 477546-477891 bp Feature: domain Description: autotrns_rpt Location: 478446-478539 bp Feature: domain Description: autotrns_rpt Location: 478446-478539 bp Feature: domain Description: autotrns_rpt Location: 478713-478803 bp Feature: domain Description: autotrns_rpt Location: 47871 3-478803 bp Feature: domain Description: Autotransporter Location: 479493-480237 bp Feature: domain Description: Autotransporter Location: 479493-480237 bp Feature: gene Location: 480516-480749 bp Feature: gene Location: 1313979-1314217 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 1314003-1314213 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 1 31 4003-1 31 421 3 bp Feature: gene Location: 1314393-1314632 bp Feature: gene Location: 1314935-1316204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1315127-1315739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 51 27-1 31 5739 bp Feature: gene Location: 1316811-1317563 bp Ori: OAM89503.1 Feature: domain Description: fabG Location: 1316826-1317558 bp Feature: domain Description: fabG Location: 1 31 6826-1 31 7558 bp Feature: gene Location: 1318049-1318489 bp Ori: OAM89515.1 Feature: domain Description: VOC_like Location: 1318070-1318445 bp Feature: domain Description: VOC_like Location: 1 31 8070-1 31 8445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), COG5340 (Transcriptional regulator, predicted component of viral defense system ), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), DUF2341 (pfam10102), Laminin_G_3 (pfam13385), TolQ (COG0811), FhaC (COG2831), RVT-DGRs/RVT-GII/RVT-CRISPR(RVT-UNC)
COG4625 (Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain ), autotrns_rpt (TIGR02601), Autotransporter (smart00869), DEDD_Tnp_IS110 (pfam01548), fabG (PRK12825), VOC_like (cd16355)

Seq: KV441839.1 Opitutaceae bacterium TSB47 genomic scaffold Scaffold1, whole genome shotgun sequence (2541025 bp)
Overview 1 RT 1: 604154-618931 bp 2 RT 2: 1224097-1227418 bp 3 RT 3: 1594383-1610985 bp Neighborhood of RT #1 [604154, 618996] Recombinase RVT-GII GIIM RDD RVT-GII GIIM Transposase_20 COG3547 Phage_int_SAM_4 integrase_gron Neighborhood of RT #2 [1224097, 1228449] RVT-GII GIIM Piwi_piwi-like_ProArk TIR_2 Neighborhood of RT #3 [1594383, 1611128] SurA adhes_NPXG DUF3739 RVT-CRISPR-like HxlR HxlR PRK10403 Feature: gene Location: 604154-604333 bp Feature: gene Location: 606064-606378 bp Feature: gene Location: 606531-607463 bp Ori: OAM91591.1 Feature: domain Description: Recombinase Location: 606534-606747 bp Feature: domain Description: Recombinase Location: 606534-606747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 606768-607005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 606768-607005 bp Feature: domain Description: GIIM Note: maturase Location: 607056-607272 bp Feature: domain Description: GIIM Note: maturase Location: 607056-6072 72 bp Feature: gene Location: 607527-608093 bp Ori: OAM91592.1 Feature: domain Description: RDD Location: 607548-608046 bp Feature: domain Description: RDD Location: 607548-608046 bp Feature: gene Location: 609599-609937 bp Feature: gene Location: 610572-611081 bp Feature: gene Location: 611096-611656 bp Feature: gene Location: 613574-614902 bp Ori: OAM91597.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 613610-614171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 613610-614171 bp Feature: domain Description: GIIM Note: maturase Location: 614222-614438 bp Feature: domain Description: GIIM Note: maturase Location: 6142 2 2 -614438 bp Feature: domain Description: Transposase_20 Location: 614507-614669 bp Feature: domain Description: Transposase_2 0 Location: 614507-614669 bp Feature: gene Location: 615814-616938 bp Ori: OAM91598.1 Feature: domain Description: COG3547 Location: 615838-616777 bp Feature: domain Description: COG3547 Location: 615838-616777 bp Feature: gene Location: 617896-618996 bp Ori: OAM91599.1 Feature: domain Description: Phage_int_SAM_4 Location: 617971-618106 bp Feature: domain Description: Phage_int_SAM_4 Location: 617971-618106 bp Feature: domain Description: integrase_gron Location: 618364-618931 bp Feature: domain Description: integrase_gron Location: 618364-618931 bp Feature: gene Location: 1224097-1224585 bp Feature: gene Location: 1224586-1225134 bp Feature: gene Location: 1225160-1225441 bp Ori: OAM91256.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1225166-1225259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 5166-12 2 52 59 bp Feature: domain Description: GIIM Note: maturase Location: 1225316-1225439 bp Feature: domain Description: GIIM Note: maturase Location: 12 2 5316-12 2 5439 bp Feature: gene Location: 1225613-1227028 bp Ori: OAM91257.1 Feature: domain Description: Piwi_piwi-like_ProArk Location: 1225646-1226975 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 12 2 5646-12 2 6975 bp Feature: gene Location: 1227025-1228449 bp Ori: OAM91258.1 Feature: domain Description: TIR_2 Location: 1227034-1227418 bp Feature: domain Description: TIR_2 Location: 12 2 7034-12 2 7418 bp Feature: gene Location: 1594383-1595288 bp Ori: OAM91042.1 Feature: domain Description: SurA Location: 1594617-1595226 bp Feature: domain Description: SurA Location: 1594617-15952 2 6 bp Feature: gene Location: 1595483-1609111 bp Ori: OAM91043.1 Feature: domain Description: adhes_NPXG Location: 1596053-1596281 bp Feature: domain Description: adhes_NPXG Location: 1596053-15962 81 bp Feature: domain Description: DUF3739 Location: 1608551-1608881 bp Feature: domain Description: DUF3739 Location: 1608551-1608881 bp Feature: gene Location: 1609323-1609946 bp Ori: OAM91044.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1609611-1609914 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1609611-1609914 bp Feature: gene Location: 1609939-1610658 bp Ori: OAM91045.1 Feature: domain Description: HxlR Location: 1610032-1610221 bp Feature: domain Description: HxlR Location: 1610032 -16102 2 1 bp Feature: domain Description: HxlR Location: 1610509-1610578 bp Feature: domain Description: HxlR Location: 1610509-1610578 bp Feature: gene Location: 1610658-1611128 bp Ori: OAM91046.1 Feature: domain Description: PRK10403 Location: 1610709-1610985 bp Feature: domain Description: PRK10403 Location: 1610709-1610985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Recombinase (pfam07508), RVT-GII, GIIM (pfam08388), RDD (pfam06271), Transposase_20 (pfam02371), COG3547 (Transposase ), Phage_int_SAM_4 (pfam13495), integrase_gron (TIGR02249), Piwi_piwi-like_ProArk (cd04659), TIR_2 (pfam13676)
SurA (COG0760), adhes_NPXG (TIGR01901), DUF3739 (pfam12545), RVT-CRISPR, HxlR (pfam01638), PRK10403 (nitrate/nitrite response regulator protein NarP)