myRT

myRT report for GCA_001650195.1_ASM165019v1

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Seq: LXYR01000030.1 Phormidesmis priestleyi BC1401 Ga0079976_1030, whole genome shotgun sequence (59999 bp)
Overview 1 RT 1: 19222-26054 bp Neighborhood of RT #1 [19222, 26317] DUF104 RVT-Retrons TPR TPR_1 TPR TPR_1 TPR TPR_1 DUF5118 DUF5117 DUF4953 Feature: gene Location: 19222-19479 bp Feature: domain Description: DUF104 Location: 19237-19348 bp Feature: domain Description: DUF1 04 Location: 1 9237-1 9348 bp Feature: gene Location: 19555-19785 bp Feature: gene Location: 20157-21971 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20358-20982 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20358-20982 bp Feature: gene Location: 22115-23437 bp Feature: domain Description: TPR Location: 22151-22427 bp Feature: domain Description: TPR Location: 221 51 -22427 bp Feature: domain Description: TPR_1 Location: 22451-22547 bp Feature: domain Description: TPR_1 Location: 22451 -22547 bp Feature: domain Description: TPR Location: 22592-22838 bp Feature: domain Description: TPR Location: 22592-22838 bp Feature: domain Description: TPR_1 Location: 22859-22955 bp Feature: domain Description: TPR_1 Location: 22859-22955 bp Feature: domain Description: TPR Location: 22964-23222 bp Feature: domain Description: TPR Location: 22964-23222 bp Feature: domain Description: TPR_1 Location: 23267-23363 bp Feature: domain Description: TPR_1 Location: 23267-23363 bp Feature: gene Location: 23540-26317 bp Feature: domain Description: DUF5118 Location: 23714-23852 bp Feature: domain Description: DUF51 1 8 Location: 2371 4-23852 bp Feature: domain Description: DUF5117 Location: 23900-24473 bp Feature: domain Description: DUF51 1 7 Location: 23900-24473 bp Feature: domain Description: DUF4953 Location: 25079-26054 bp Feature: domain Description: DUF4953 Location: 25079-26054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF104 (pfam01954), RVT-Retrons, TPR (smart00028), TPR_1 (pfam00515), DUF5118 (pfam17162), DUF5117 (pfam17148), DUF4953 (pfam16313)

Seq: LXYR01000055.1 Phormidesmis priestleyi BC1401 Ga0079976_1055, whole genome shotgun sequence (29107 bp)
Overview 1 RT 1: 23525-28886 bp Neighborhood of RT #1 [23525, 28909] gatA SpoVT_AbrB RVT-Retrons AlbA_2 TPR TPR COG1606 Feature: gene Location: 23525-24973 bp Feature: domain Description: gatA Location: 23564-24935 bp Feature: domain Description: gatA Location: 2 3564-2 4935 bp Feature: gene Location: 25072-25302 bp Feature: domain Description: SpoVT_AbrB Location: 25093-25198 bp Feature: domain Description: SpoVT_AbrB Location: 2 5093-2 5198 bp Feature: gene Location: 25406-26539 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25589-26192 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 5589-2 6192 bp Feature: gene Location: 26745-27830 bp Feature: domain Description: AlbA_2 Location: 26796-27225 bp Feature: domain Description: AlbA_2 Location: 2 6796-2 72 2 5 bp Feature: domain Description: TPR Location: 27264-27516 bp Feature: domain Description: TPR Location: 2 72 64-2 7516 bp Feature: domain Description: TPR Location: 27540-27777 bp Feature: domain Description: TPR Location: 2 7540-2 7777 bp Feature: gene Location: 28079-28909 bp Feature: domain Description: COG1606 Location: 28088-28886 bp Feature: domain Description: COG1606 Location: 2 8088-2 8886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gatA (TIGR00132), SpoVT_AbrB (smart00966), RVT-Retrons, AlbA_2 (pfam04326), TPR (smart00028), COG1606 (ATP-utilizing enzyme, PP-loop superfamily )

Seq: LXYR01000090.1 Phormidesmis priestleyi BC1401 Ga0079976_1090, whole genome shotgun sequence (11952 bp)
Overview 1 RT 1: 749-7467 bp Neighborhood of RT #1 [749, 7598] PRK09974 RVT-UG13 NB-ARC KOG0266 KOG0266 KOG0271 KOG0266 KOG0266 Feature: gene Location: 749-1135 bp Feature: domain Description: PRK09974 Location: 824-1133 bp Feature: domain Description: PRK09974 Location: 824-113 3 bp Feature: gene Location: 1162-1326 bp Feature: gene Location: 1413-2753 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 1824-2298 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 1824-2298 bp Feature: gene Location: 3010-3177 bp Feature: gene Location: 4041-7598 bp Feature: domain Description: NB-ARC Location: 4380-4995 bp Feature: domain Description: NB-ARC Location: 43 80-4995 bp Feature: domain Description: KOG0266 Location: 5679-6222 bp Feature: domain Description: KOG0266 Location: 5679-6222 bp Feature: domain Description: KOG0266 Location: 6336-6693 bp Feature: domain Description: KOG0266 Location: 63 3 6-6693 bp Feature: domain Description: KOG0271 Location: 6702-6960 bp Feature: domain Description: KOG0271 Location: 6702-6960 bp Feature: domain Description: KOG0266 Location: 6984-7230 bp Feature: domain Description: KOG0266 Location: 6984-723 0 bp Feature: domain Description: KOG0266 Location: 7251-7467 bp Feature: domain Description: KOG0266 Location: 7251-7467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09974 (type II toxin-antitoxin system PrlF family antitoxin), RVT-UG13, NB-ARC (pfam00931), KOG0266 (KOG0266, WD40 repeat-containing protein ), KOG0271 (KOG0271, Notchless-like WD40 repeat-containing protein )

Seq: LXYR01000112.1 Phormidesmis priestleyi BC1401 Ga0079976_1112, whole genome shotgun sequence (6209 bp)
Overview 1 RT 1: 126-2252 bp Neighborhood of RT #1 [126, 2252] RVT-GII GIIM Feature: gene Location: 126-1430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381-1065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381-1065 bp Feature: domain Description: GIIM Note: maturase Location: 1149-1353 bp Feature: domain Description: GIIM Note: maturase Location: 114 9-1353 bp Feature: gene Location: 1826-1981 bp Feature: gene Location: 2112-2252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)