myRT

myRT report for GCA_001650425.1_ASM165042v1

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Seq: LWCR01000015.1 Pseudomonas oryzihabitans strain H72 contig_22, whole genome shotgun sequence (85630 bp)
Overview 1 RT 1: 63271-70809 bp Neighborhood of RT #1 [63271, 70859] PRK10859 PRK15116 RVT_N RVT-GII GIIM HNHc PRK13009 rrmA Feature: gene Location: 63271-64755 bp Feature: domain Description: PRK10859 Location: 63337-64681 bp Feature: domain Description: PRK1 0859 Location: 63337-64681 bp Feature: gene Location: 65111-65896 bp Feature: domain Description: PRK15116 Location: 65126-65885 bp Feature: domain Description: PRK1 51 1 6 Location: 651 26-65885 bp Feature: gene Location: 66035-67774 bp Feature: RT Description: RVT_N Location: 66095-66338 bp Feature: RT Description: RVT_N Location: 66095-66338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66386-67037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66386-67037 bp Feature: domain Description: GIIM Note: maturase Location: 67112-67343 bp Feature: domain Description: GIIM Note: maturase Location: 671 1 2-67343 bp Feature: domain Description: HNHc Note: nucleases Location: 67565-67727 bp Feature: domain Description: HNHc Note: nucleases Location: 67565-67727 bp Feature: gene Location: 68908-70050 bp Feature: domain Description: PRK13009 Location: 68929-70045 bp Feature: domain Description: PRK1 3009 Location: 68929-70045 bp Feature: gene Location: 70047-70859 bp Feature: domain Description: rrmA Location: 70050-70809 bp Feature: domain Description: rrmA Location: 70050-70809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10859 (membrane-bound lytic murein transglycosylase MltF), PRK15116 (sulfur acceptor protein CsdL; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13009 (succinyl-diaminopimelate desuccinylase; Reviewed), rrmA (PRK11088)

Seq: LWCR01000011.1 Pseudomonas oryzihabitans strain H72 contig_19, whole genome shotgun sequence (105966 bp)
Overview 1 RT 1: 101868-105921 bp Neighborhood of RT #1 [101868, 105962] PRK08057 Precorrin-6Y-methylase CobL RVT_N RVT-GII YkfC HNHc Feature: gene Location: 101868-102590 bp Feature: domain Description: PRK08057 Location: 101871-102582 bp Feature: domain Description: PRK08057 Location: 101871-102 582 bp Feature: gene Location: 102842-104044 bp Feature: domain Description: Precorrin-6Y-methylase Location: 102857-103454 bp Feature: domain Description: Precorrin-6Y-methylase Location: 102 857-103454 bp Feature: domain Description: CobL Location: 103493-104039 bp Feature: domain Description: CobL Location: 103493-104039 bp Feature: gene Location: 104229-105962 bp Feature: RT Description: RVT_N Location: 104289-104532 bp Feature: RT Description: RVT_N Location: 1042 89-104532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104580-105231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104580-1052 31 bp Feature: domain Description: YkfC Location: 105276-105603 bp Feature: domain Description: YkfC Location: 1052 76-105603 bp Feature: domain Description: HNHc Note: nucleases Location: 105759-105921 bp Feature: domain Description: HNHc Note: nucleases Location: 105759-10592 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08057 (cobalt-precorrin-6x reductase; Reviewed), Precorrin-6Y-methylase, CobL (COG2242), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: LWCR01000027.1 Pseudomonas oryzihabitans strain H72 contig_33, whole genome shotgun sequence (42123 bp)
Overview 1 RT 1: 12217-17677 bp Neighborhood of RT #1 [12217, 17677] YbaY Nnt1 RVT_N RVT-GII YkfC HNH YbbN Feature: gene Location: 12217-12681 bp Feature: domain Description: YbaY Location: 12244-12607 bp Feature: domain Description: YbaY Location: 12244-12607 bp Feature: gene Location: 12678-13325 bp Feature: domain Description: Nnt1 Location: 12753-13248 bp Feature: domain Description: Nnt1 Location: 12753 -13 248 bp Feature: gene Location: 14444-16177 bp Feature: RT Description: RVT_N Location: 14504-14747 bp Feature: RT Description: RVT_N Location: 14504-14747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14795-15446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14795-15446 bp Feature: domain Description: YkfC Location: 15599-15989 bp Feature: domain Description: YkfC Location: 15599-15989 bp Feature: domain Description: HNH Note: nucleases Location: 16004-16142 bp Feature: domain Description: HNH Note: nucleases Location: 16004-16142 bp Feature: gene Location: 16326-17195 bp Feature: domain Description: YbbN Location: 16332-17193 bp Feature: domain Description: YbbN Location: 163 3 2-17193 bp Feature: gene Location: 17321-17677 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbaY (COG3126), Nnt1 (COG3897), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), YbbN (COG3118)

Seq: LWCR01000002.1 Pseudomonas oryzihabitans strain H72 contig_10, whole genome shotgun sequence (171221 bp)
Overview 1 RT 1: 61463-68366 bp Neighborhood of RT #1 [61463, 68410] PRK00220 PRK09604 RVT_N RVT-GII GIIM HNH RpsU dnaG Feature: gene Location: 61463-62032 bp Feature: domain Description: PRK00220 Location: 61469-62027 bp Feature: domain Description: PRK00220 Location: 614 69-62027 bp Feature: gene Location: 62078-63103 bp Feature: domain Description: PRK09604 Location: 62081-63095 bp Feature: domain Description: PRK09604 Location: 62081-63095 bp Feature: gene Location: 64268-65956 bp Feature: RT Description: RVT_N Location: 64325-64568 bp Feature: RT Description: RVT_N Location: 64 325-64 568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64613-65249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64 613-6524 9 bp Feature: domain Description: GIIM Note: maturase Location: 65303-65534 bp Feature: domain Description: GIIM Note: maturase Location: 65303-65534 bp Feature: domain Description: HNH Note: nucleases Location: 65786-65924 bp Feature: domain Description: HNH Note: nucleases Location: 65786-65924 bp Feature: gene Location: 66124-66339 bp Feature: domain Description: RpsU Location: 66127-66325 bp Feature: domain Description: RpsU Location: 66127-66325 bp Feature: gene Location: 66503-68410 bp Feature: domain Description: dnaG Location: 66512-68366 bp Feature: domain Description: dnaG Location: 66512-68366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00220 (glycerol-3-phosphate 1-O-acyltransferase PlsY), PRK09604 (tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), RpsU (COG0828), dnaG (TIGR01391)