myRT

myRT report for GCA_001650605.1_ASM165060v1

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Seq: JZXA01000137.1 Escherichia coli strain EC1636 EC1636_c137, whole genome shotgun sequence (2485 bp)
Overview 1 RT 1: 2-2369 bp Neighborhood of RT #1 [2, 2404] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-163 bp Feature: gene Location: 737-2404 bp Feature: domain Description: RVT_N Location: 785-1022 bp Feature: domain Description: RVT_N Location: 785-1 022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1073-1715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 073-1 71 5 bp Feature: domain Description: GIIM Note: maturase Location: 1766-2000 bp Feature: domain Description: GIIM Note: maturase Location: 1 766-2000 bp Feature: domain Description: HNHc Note: nucleases Location: 2210-2369 bp Feature: domain Description: HNHc Note: nucleases Location: 221 0-2369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JZXA01000058.1 Escherichia coli strain EC1636 EC1636_c58, whole genome shotgun sequence (9735 bp)
Overview 1 RT 1: 4124-7608 bp Neighborhood of RT #1 [4124, 7608] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 4124-4276 bp Feature: gene Location: 4346-5248 bp Feature: domain Description: DUF1281 Location: 4415-4943 bp Feature: domain Description: DUF12 81 Location: 4415-4943 bp Feature: domain Description: DUF1281_C Location: 4949-5189 bp Feature: domain Description: DUF12 81_C Location: 4949-5189 bp Feature: gene Location: 5325-7049 bp Feature: domain Description: RVT_N Location: 5382-5619 bp Feature: domain Description: RVT_N Location: 5382 -5619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5670-6318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5670-6318 bp Feature: domain Description: YkfC Location: 6450-6606 bp Feature: domain Description: YkfC Location: 6450-6606 bp Feature: domain Description: HNHc Note: nucleases Location: 6834-6993 bp Feature: domain Description: HNHc Note: nucleases Location: 6834-6993 bp Feature: gene Location: 7090-7230 bp Feature: gene Location: 7312-7608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: JZXA01000089.1 Escherichia coli strain EC1636 EC1636_c89, whole genome shotgun sequence (49866 bp)
Overview 1 RT 1: 2-5528 bp Neighborhood of RT #1 [2, 5530] Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-UG17 SLATT_5 prfC Feature: gene Location: 2-664 bp Feature: domain Description: Collar Location: 8-125 bp Feature: domain Description: Collar Location: 8-125 bp Feature: domain Description: Phage_fiber Location: 176-215 bp Feature: domain Description: Phage_fiber Location: 176-215 bp Feature: domain Description: Phage_fiber Location: 272-311 bp Feature: domain Description: Phage_fiber Location: 272-3 11 bp Feature: domain Description: Phage_fiber Location: 467-506 bp Feature: domain Description: Phage_fiber Location: 467-506 bp Feature: domain Description: Phage_fiber Location: 512-542 bp Feature: domain Description: Phage_fiber Location: 512-542 bp Feature: gene Location: 664-1248 bp Feature: domain Description: Caudo_TAP Location: 880-1237 bp Feature: domain Description: Caudo_TAP Location: 880-123 7 bp Feature: gene Location: 1361-2731 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1589-2195 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1589-2195 bp Feature: gene Location: 2709-3413 bp Feature: domain Description: SLATT_5 Location: 2871-3381 bp Feature: domain Description: SLATT_5 Location: 2871-3 3 81 bp Feature: gene Location: 3944-5530 bp Feature: domain Description: prfC Location: 3962-5528 bp Feature: domain Description: prfC Location: 3 962-5528 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Collar (pfam07484), Phage_fiber (pfam03335), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160), prfC (TIGR00503)