myRT

myRT report for GCA_001651615.1_ASM165161v1

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Seq: JSVO01000014.1 Escherichia coli strain UPEC_004 scaffold14, whole genome shotgun sequence (93088 bp)
Overview 1 RT 1: 53061-56943 bp Neighborhood of RT #1 [53061, 56948] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 53061-53777 bp Ori: OAO58049.1 Gene: rph Feature: domain Description: rph Location: 53064-53772 bp Feature: domain Description: rph Location: 53064-53772 bp Feature: gene Location: 53843-54484 bp Ori: OAO58050.1 Gene: pyrE Feature: domain Description: pyrE Location: 53846-54479 bp Feature: domain Description: pyrE Location: 53846-54479 bp Feature: gene Location: 54782-55741 bp Ori: OAO58051.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54917-55466 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5491 7-55466 bp Feature: gene Location: 55787-56383 bp Ori: OAO58052.1 Gene: slmA Feature: domain Description: slmA Location: 55793-56369 bp Feature: domain Description: slmA Location: 55793-56369 bp Feature: gene Location: 56490-56948 bp Ori: OAO58053.1 Feature: domain Description: dut Location: 56496-56943 bp Feature: domain Description: dut Location: 56496-56943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: JSVO01000032.1 Escherichia coli strain UPEC_004 scaffold32, whole genome shotgun sequence (26384 bp)
Overview 1 RT 1: 448-1511 bp Neighborhood of RT #1 [448, 1511] RVT-GII GIIM Feature: gene Location: 448-930 bp Ori: OAO57167.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-697 bp Feature: domain Description: GIIM Note: maturase Location: 745-925 bp Feature: domain Description: GIIM Note: maturase Location: 745-92 5 bp Feature: gene Location: 1029-1208 bp Feature: gene Location: 1200-1511 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)