myRT

myRT report for GCA_001651785.1_ASM165178v1

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Seq: LWSF01000007.1 Amycolatopsis sp. M39 A4R44_contig000007, whole genome shotgun sequence (256310 bp)
Overview 1 RT 1: 8887-14090 bp Neighborhood of RT #1 [8887, 14090] IS285 RVT-GII GIIM IS285 Feature: gene Location: 8887-9255 bp Feature: gene Location: 9518-9970 bp Feature: domain Description: IS285 Location: 9620-9947 bp Feature: domain Description: IS285 Location: 9620-9947 bp Feature: gene Location: 10536-11999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10875-11571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0875-1 1 571 bp Feature: domain Description: GIIM Note: maturase Location: 11646-11856 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 646-1 1 856 bp Feature: gene Location: 12148-13074 bp Feature: domain Description: IS285 Location: 12151-12775 bp Feature: domain Description: IS285 Location: 1 21 51 -1 2775 bp Feature: gene Location: 13353-14090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), IS285 (COG3328)

Seq: LWSF01000038.1 Amycolatopsis sp. M39 A4R44_contig000038, whole genome shotgun sequence (67402 bp)
Overview 1 RT 1: 53804-57673 bp Neighborhood of RT #1 [53804, 57711] DNase_NucA_NucB RVT-GII GIIM DUF262 DUF1524 Feature: gene Location: 53804-54847 bp Feature: gene Location: 54935-55069 bp Feature: domain Description: DNase_NucA_NucB Location: 54941-55058 bp Feature: domain Description: DNase_NucA_NucB Location: 54941-55058 bp Feature: gene Location: 55192-55911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55195-55480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55195-55480 bp Feature: domain Description: GIIM Note: maturase Location: 55555-55780 bp Feature: domain Description: GIIM Note: maturase Location: 55555-55780 bp Feature: gene Location: 56156-56578 bp Feature: domain Description: DUF262 Location: 56195-56444 bp Feature: domain Description: DUF2 62 Location: 56195-56444 bp Feature: gene Location: 56575-57711 bp Feature: domain Description: DUF1524 Location: 57220-57673 bp Feature: domain Description: DUF152 4 Location: 572 2 0-57673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DNase_NucA_NucB (pfam14040), RVT-GII, GIIM (pfam08388), DUF262 (pfam03235), DUF1524 (pfam07510)

Seq: LWSF01000001.1 Amycolatopsis sp. M39 A4R44_contig000001, whole genome shotgun sequence (1000719 bp)
Overview 1 RT 1: 702422-706255 bp Neighborhood of RT #1 [702422, 706255] RVT-Retrons HTH_MARR Feature: gene Location: 702422-702616 bp Feature: gene Location: 703614-704069 bp Feature: gene Location: 704081-705133 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 704282-704897 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 704282-704897 bp Feature: gene Location: 705364-705888 bp Feature: domain Description: HTH_MARR Location: 705451-705727 bp Feature: domain Description: HTH_MARR Location: 705451-705727 bp Feature: gene Location: 706091-706255 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_MARR (smart00347)