myRT

myRT report for GCA_001652185.1_ASM165218v1

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Seq: LVXZ01000032.1 Acidithiobacillus ferrooxidans strain BY0502 contig032, whole genome shotgun sequence (24142 bp)
Overview 1 RT 1: 14681-17508 bp Neighborhood of RT #1 [14681, 21338] AcyC COG3666 DDE_Tnp_1 RVT-Retrons AAA_16 Feature: gene Location: 14681-14938 bp Ori: OAP92709.1 Feature: domain Description: AcyC Location: 14720-14918 bp Feature: domain Description: AcyC Location: 1 4720-1 491 8 bp Feature: gene Location: 15062-16117 bp Ori: OAP92710.1 Feature: domain Description: COG3666 Location: 15119-15548 bp Feature: domain Description: COG3666 Location: 1 51 1 9-1 5548 bp Feature: domain Description: DDE_Tnp_1 Location: 15572-16088 bp Feature: domain Description: DDE_Tnp_1 Location: 1 5572-1 6088 bp Feature: gene Location: 16149-16583 bp Ori: OAP92711.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16284-16560 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 6284-1 6560 bp Feature: gene Location: 17070-21338 bp Ori: OAP92712.1 Feature: domain Description: AAA_16 Location: 17214-17508 bp Feature: domain Description: AAA_1 6 Location: 1 721 4-1 7508 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcyC (COG2114), COG3666 (Transposase ), DDE_Tnp_1 (pfam01609), RVT-Retrons, AAA_16 (pfam13191)

Seq: LVXZ01000049.1 Acidithiobacillus ferrooxidans strain BY0502 contig049, whole genome shotgun sequence (13883 bp)
Overview 1 RT 1: 1-2197 bp Neighborhood of RT #1 [1, 2208] RVT-GII MazF Feature: gene Location: 1-813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 289-814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 89-814 bp Feature: gene Location: 1665-1895 bp Feature: gene Location: 1882-2208 bp Ori: OAP92079.1 Feature: domain Description: MazF Location: 1885-2197 bp Feature: domain Description: MazF Location: 1885-2 197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, MazF (COG2337)

Seq: LVXZ01000282.1 Acidithiobacillus ferrooxidans strain BY0502 contig282, whole genome shotgun sequence (3411 bp)
Overview 1 RT 1: 287-2603 bp Neighborhood of RT #1 [287, 2603] RVT-Retrons InsE Feature: gene Location: 287-1480 bp Ori: OAP87311.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 293-515 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 293 -515 bp Feature: gene Location: 2170-2481 bp Ori: OAP87312.1 Feature: domain Description: InsE Location: 2173-2461 bp Feature: domain Description: InsE Location: 2173 -2461 bp Feature: gene Location: 2478-2603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, InsE (COG2963)

Seq: LVXZ01000024.1 Acidithiobacillus ferrooxidans strain BY0502 contig024, whole genome shotgun sequence (13101 bp)
Overview 1 RT 1: 435-4021 bp Neighborhood of RT #1 [435, 5685] RVT-Retrons YeeA Feature: gene Location: 435-1373 bp Ori: OAP92878.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 552-1143 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 552-114 3 bp Feature: gene Location: 1370-2290 bp Feature: gene Location: 2887-5685 bp Ori: OAP92880.1 Feature: domain Description: YeeA Location: 3712-4021 bp Feature: domain Description: YeeA Location: 3712-4 021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, YeeA (COG1002)

Seq: LVXZ01000150.1 Acidithiobacillus ferrooxidans strain BY0502 contig150, whole genome shotgun sequence (6631 bp)
Overview 1 RT 1: 742-5638 bp Neighborhood of RT #1 [742, 6030] COG3547 RVT-GII Resolvase Recombinase RVT-GII Feature: gene Location: 742-945 bp Feature: gene Location: 1043-1873 bp Ori: OAP88890.1 Feature: domain Description: COG3547 Location: 1064-1832 bp Feature: domain Description: COG35 47 Location: 1064-1832 bp Feature: gene Location: 2275-3012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2701-3013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2701-3013 bp Feature: gene Location: 3290-3526 bp Feature: gene Location: 3670-5363 bp Feature: domain Description: Resolvase Location: 3682-4123 bp Feature: domain Description: Resolvase Location: 3682-4123 bp Feature: domain Description: Recombinase Location: 4210-4423 bp Feature: domain Description: Recombinase Location: 4210-4423 bp Feature: gene Location: 5428-6030 bp Ori: OAP88892.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5431-5638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 431-5 638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, Resolvase (smart00857), Recombinase (pfam07508)

Seq: LVXZ01000276.1 Acidithiobacillus ferrooxidans strain BY0502 contig276, whole genome shotgun sequence (1102 bp)
Overview 1 RT 1: 69-987 bp Neighborhood of RT #1 [69, 1064] RVT-GII GIIM Feature: gene Location: 69-1064 bp Ori: OAP87341.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222-744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222-744 bp Feature: domain Description: GIIM Note: maturase Location: 765-987 bp Feature: domain Description: GIIM Note: maturase Location: 76 5-987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LVXZ01000046.1 Acidithiobacillus ferrooxidans strain BY0502 contig046, whole genome shotgun sequence (27390 bp)
Overview 1 RT 1: 22891-25404 bp Neighborhood of RT #1 [22891, 25457] RVT-GII CusF_Ec Y1_Tnp Feature: gene Location: 22891-23289 bp Feature: gene Location: 23549-23887 bp Feature: gene Location: 23925-24302 bp Ori: OAP92193.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23931-24033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23931-24033 bp Feature: gene Location: 24759-25133 bp Ori: OAP92194.1 Feature: domain Description: CusF_Ec Location: 24921-25122 bp Feature: domain Description: CusF_Ec Location: 24921-25122 bp Feature: gene Location: 25206-25457 bp Ori: OAP92195.1 Feature: domain Description: Y1_Tnp Location: 25209-25404 bp Feature: domain Description: Y1_Tnp Location: 25209-25404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, CusF_Ec (pfam11604), Y1_Tnp (pfam01797)