myRT

myRT report for GCA_001652265.1_ASM165226v1

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Seq: LWBS01000464.1 Rhizobium leguminosarum strain Vaf-46 NODE_92_length_16860_cov_22.5149_ID_183, whole genome shotgun sequence (16860 bp)
Overview 1 RT 1: 5303-9143 bp Neighborhood of RT #1 [5303, 9169] HTH_Tnp_1 Rve RVT-GII GIIM PRK10549 Feature: gene Location: 5303-5689 bp Ori: OAP88099.1 Feature: domain Description: HTH_Tnp_1 Location: 5390-5543 bp Feature: domain Description: HTH_Tnp_1 Location: 5390-5543 bp Feature: gene Location: 6122-6822 bp Feature: domain Description: Rve Location: 6152-6251 bp Feature: domain Description: Rve Location: 61 52-6251 bp Feature: gene Location: 6868-7488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6880-6967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6880-6967 bp Feature: domain Description: GIIM Note: maturase Location: 7039-7267 bp Feature: domain Description: GIIM Note: maturase Location: 7039-7267 bp Feature: gene Location: 7497-8023 bp Feature: gene Location: 8102-9169 bp Ori: OAP88100.1 Feature: domain Description: PRK10549 Location: 8276-9143 bp Feature: domain Description: PRK1 0549 Location: 8276-91 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), Rve (COG3316), RVT-GII, GIIM (pfam08388), PRK10549 (two-component system sensor histidine kinase BaeS)

Seq: LWBS01000450.1 Rhizobium leguminosarum strain Vaf-46 NODE_7_length_207831_cov_21.7474_ID_13, whole genome shotgun sequence (207831 bp)
Overview 1 RT 1: 100825-107131 bp Neighborhood of RT #1 [100825, 107163] UgpB HTH_LacI PBP1_AglR_RafR_like RVT-UG7 HTH_1 PBP2_LTTR_like_6 Feature: gene Location: 100825-102060 bp Ori: OAP88717.1 Feature: domain Description: UgpB Location: 100834-102037 bp Feature: domain Description: UgpB Location: 100834-102 037 bp Feature: gene Location: 102514-103557 bp Ori: OAP88718.1 Feature: domain Description: HTH_LacI Location: 102583-102736 bp Feature: domain Description: HTH_LacI Location: 102 583-102 736 bp Feature: domain Description: PBP1_AglR_RafR_like Location: 102751-103540 bp Feature: domain Description: PBP1_AglR_RafR_like Location: 102 751-103540 bp Feature: gene Location: 103857-105488 bp Ori: OAP88719.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 104280-104691 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1042 80-104691 bp Feature: gene Location: 105475-106230 bp Feature: gene Location: 106258-107163 bp Ori: OAP88720.1 Feature: domain Description: HTH_1 Location: 106273-106444 bp Feature: domain Description: HTH_1 Location: 1062 73-106444 bp Feature: domain Description: PBP2_LTTR_like_6 Location: 106537-107131 bp Feature: domain Description: PBP2 _LTTR_like_6 Location: 106537-107131 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UgpB (COG1653), HTH_LacI (cd01392), PBP1_AglR_RafR_like, RVT-UG7, HTH_1 (pfam00126), PBP2_LTTR_like_6 (cd08423)

Seq: LWBS01000104.1 Rhizobium leguminosarum strain Vaf-46 NODE_196_length_2188_cov_61.9059_ID_391, whole genome shotgun sequence (2188 bp)
Overview 1 RT 1: 74-1349 bp Neighborhood of RT #1 [74, 1567] RVT_N RVT-GII YkfC Feature: gene Location: 74-1567 bp Ori: OAP95732.1 Feature: domain Description: RVT_N Location: 137-380 bp Feature: domain Description: RVT_N Location: 13 7-3 80 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425-1067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425-1067 bp Feature: domain Description: YkfC Location: 1067-1349 bp Feature: domain Description: YkfC Location: 1067-13 49 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: LWBS01000351.1 Rhizobium leguminosarum strain Vaf-46 NODE_422_length_436_cov_0.996764_ID_843, whole genome shotgun sequence (436 bp)
Overview 1 RT 1: 11-254 bp Neighborhood of RT #1 [11, 421] RVT-GII Feature: gene Location: 11-421 bp Ori: OAP91894.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17-254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17-254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LWBS01000113.1 Rhizobium leguminosarum strain Vaf-46 NODE_203_length_1926_cov_202.552_ID_405, whole genome shotgun sequence (1926 bp)
Overview 1 RT 1: 492-1731 bp Neighborhood of RT #1 [492, 1820] RVT-GII GIIM Feature: gene Location: 492-1820 bp Ori: OAP95262.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 789-1443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 789-1443 bp Feature: domain Description: GIIM Note: maturase Location: 1512-1731 bp Feature: domain Description: GIIM Note: maturase Location: 15 12-1731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LWBS01000152.1 Rhizobium leguminosarum strain Vaf-46 NODE_238_length_913_cov_245.88_ID_475, whole genome shotgun sequence (913 bp)
Overview 1 RT 1: 24-912 bp Neighborhood of RT #1 [24, 913] RVT-GII Feature: gene Location: 24-913 bp Ori: OAP94881.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351-912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351-912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII