myRT

myRT report for GCA_001653035.1_ASM165303v1

Download annotations/find similar RTs

Seq: BCWH01000001.1 Rhodococcus sp. YH3-3 DNA, contig: Scaffold1, whole genome shotgun sequence (2708119 bp)
Overview 1 RT 1: 195500-199894 bp Neighborhood of RT #1 [195500, 199920] PRK06557 PBP2_DszB RVT-Retrons RidA MhpC Feature: gene Location: 195500-196207 bp Feature: domain Description: PRK06557 Location: 195545-196148 bp Feature: domain Description: PRK06557 Location: 1 95545-1 961 48 bp Feature: gene Location: 195685-197082 bp Feature: domain Description: PBP2_DszB Location: 196252-196996 bp Feature: domain Description: PBP2_DszB Location: 1 96252-1 96996 bp Feature: gene Location: 197415-198665 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 197826-198432 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 97826-1 98432 bp Feature: gene Location: 198679-199065 bp Feature: domain Description: RidA Location: 198715-199054 bp Feature: domain Description: RidA Location: 1 9871 5-1 99054 bp Feature: gene Location: 199108-199920 bp Feature: domain Description: MhpC Location: 199135-199894 bp Feature: domain Description: MhpC Location: 1 991 35-1 99894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06557 (L-ribulose-5-phosphate 4-epimerase; Validated), PBP2_DszB (cd13554), RVT-Retrons, RidA (COG0251), MhpC (COG0596)

Seq: BCWH01000005.1 Rhodococcus sp. YH3-3 DNA, contig: Scaffold5, whole genome shotgun sequence (173150 bp)
Overview 1 RT 1: 108817-116132 bp Neighborhood of RT #1 [108817, 116132] IS285 Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Cas_Cas02710 Feature: gene Location: 108817-110100 bp Feature: domain Description: IS285 Location: 108892-110086 bp Feature: domain Description: IS2 85 Location: 108892 -110086 bp Feature: gene Location: 110196-110471 bp Feature: domain Description: Cas2_I_II_III Location: 110211-110406 bp Feature: domain Description: Cas2 _I_II_III Location: 1102 11-110406 bp Feature: gene Location: 110487-112331 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 110703-111282 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 110703-1112 82 bp Feature: domain Description: Cas1_I-II-III Location: 111351-112290 bp Feature: domain Description: Cas1_I-II-III Location: 111351-112 2 90 bp Feature: gene Location: 112646-114766 bp Feature: domain Description: Cas_Cas02710 Location: 112694-112958 bp Feature: domain Description: Cas_Cas02 710 Location: 112 694-112 958 bp Feature: gene Location: 114993-116132 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas_Cas02710 (pfam09670)