myRT

myRT report for GCA_001653845.1_ASM165384v1

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Seq: LWUM01000144.1 Proteus mirabilis strain PM_178 contig_57, whole genome shotgun sequence (4836 bp)
Overview 1 RT 1: 1-2630 bp Neighborhood of RT #1 [1, 2689] RVT_N RVT-GII DUF932 YafY YafY Feature: gene Location: 1-484 bp Feature: RT Description: RVT_N Location: 55-298 bp Feature: RT Description: RVT_N Location: 55-298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343-466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343-466 bp Feature: gene Location: 1009-1770 bp Feature: domain Description: DUF932 Location: 1063-1720 bp Feature: domain Description: DUF932 Location: 1 063-1 720 bp Feature: gene Location: 1982-2689 bp Feature: domain Description: YafY Location: 2012-2177 bp Feature: domain Description: YafY Location: 201 2-21 77 bp Feature: domain Description: YafY Location: 2348-2630 bp Feature: domain Description: YafY Location: 2348-2630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT_N (pfam13655), RVT-GII, YafY (COG2378)

Seq: LWUM01000046.1 Proteus mirabilis strain PM_178 contig_14, whole genome shotgun sequence (90064 bp)
Overview 1 RT 1: 64501-71698 bp Neighborhood of RT #1 [64501, 71706] YqiC ABC_ATPase ABC_ATPase RVT-Retrons PRK11316 PRK11072 Feature: gene Location: 64501-64815 bp Feature: domain Description: YqiC Location: 64504-64756 bp Feature: domain Description: YqiC Location: 64504-64756 bp Feature: gene Location: 64876-66183 bp Feature: domain Description: ABC_ATPase Location: 64924-65023 bp Feature: domain Description: ABC_ATPase Location: 6492 4-6502 3 bp Feature: domain Description: ABC_ATPase Location: 65413-65605 bp Feature: domain Description: ABC_ATPase Location: 65413-65605 bp Feature: gene Location: 66183-67136 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66303-66864 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66303-66864 bp Feature: gene Location: 67347-68771 bp Feature: domain Description: PRK11316 Location: 67350-68766 bp Feature: domain Description: PRK11316 Location: 67350-68766 bp Feature: gene Location: 68872-71706 bp Feature: domain Description: PRK11072 Location: 68887-71698 bp Feature: domain Description: PRK11072 Location: 68887-71698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YqiC (COG2960), ABC_ATPase (pfam09818), RVT-Retrons, PRK11316 (bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE), PRK11072 (bifunctional adenylyltransferase)

Seq: LWUM01000136.1 Proteus mirabilis strain PM_178 contig_5, whole genome shotgun sequence (179504 bp)
Overview 1 RT 1: 148445-154227 bp Neighborhood of RT #1 [148445, 154227] PRK10354 ACD_IbpA-B_like RVT-Retrons DUF4747 Feature: gene Location: 148445-148657 bp Feature: domain Description: PRK10354 Location: 148448-148655 bp Feature: domain Description: PRK103 54 Location: 148448-148655 bp Feature: gene Location: 148989-149447 bp Feature: domain Description: ACD_IbpA-B_like Location: 149121-149388 bp Feature: domain Description: ACD_IbpA-B_like Location: 149121-1493 88 bp Feature: gene Location: 150004-151845 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 150139-150838 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15013 9-15083 8 bp Feature: gene Location: 152691-153626 bp Feature: domain Description: DUF4747 Location: 152715-153537 bp Feature: domain Description: DUF4747 Location: 152715-153 53 7 bp Feature: gene Location: 153952-154227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10354 (RNA chaperone/antiterminator CspA), ACD_IbpA-B_like (cd06470), RVT-Retrons, DUF4747 (pfam15931)