myRT

myRT report for GCA_001654735.1_ASM165473v1

Download annotations/find similar RTs

Seq: LWSE01000152.1 Escherichia coli strain 007PP2015 NODE_90_length_2353_cov_32.6531_ID_10888, whole genome shotgun sequence (2353 bp)
Overview 1 RT 1: 159-2170 bp Neighborhood of RT #1 [159, 2184] RVT-GII GIIM YhhI Feature: gene Location: 159-299 bp Feature: gene Location: 663-1913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 867-1524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 867-1 524 bp Feature: domain Description: GIIM Note: maturase Location: 1605-1827 bp Feature: domain Description: GIIM Note: maturase Location: 1 605-1 827 bp Feature: gene Location: 1960-2184 bp Feature: domain Description: YhhI Location: 1999-2170 bp Feature: domain Description: YhhI Location: 1 999-21 70 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: LWSE01000100.1 Escherichia coli strain 007PP2015 NODE_3_length_256419_cov_29.0992_ID_10714, whole genome shotgun sequence (256419 bp)
Overview 1 RT 1: 65125-71376 bp Neighborhood of RT #1 [65125, 72278] Q FRG RVT-Retrons Phage_GPA Feature: gene Location: 65125-66159 bp Feature: domain Description: Q Location: 65128-66151 bp Feature: domain Description: Q Location: 6512 8-66151 bp Feature: gene Location: 66672-68036 bp Feature: domain Description: FRG Location: 67239-67524 bp Feature: domain Description: FRG Location: 672 39-6752 4 bp Feature: gene Location: 68145-69095 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 68325-68868 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6832 5-68868 bp Feature: gene Location: 69418-69711 bp Feature: gene Location: 69990-72278 bp Feature: domain Description: Phage_GPA Location: 70389-71376 bp Feature: domain Description: Phage_GPA Location: 70389-71376 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), FRG (smart00901), RVT-Retrons, Phage_GPA (pfam05840)