myRT

myRT report for GCA_001654785.2_O_tsutsugamushi_Karp_2M

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Seq: LYMA02000001.1 Orientia tsutsugamushi str. Karp Karp_Contig0000001, whole genome shotgun sequence (8079 bp)
Overview 1 RT 1: 33-5084 bp Neighborhood of RT #1 [33, 5084] GIIM HNHc RVT_N RVT-GII Feature: gene Location: 33-1373 bp Feature: gene Location: 1614-2243 bp Feature: domain Description: GIIM Note: maturase Location: 1635-1830 bp Feature: domain Description: GIIM Note: maturase Location: 1 635-1 830 bp Feature: domain Description: HNHc Note: nucleases Location: 2019-2184 bp Feature: domain Description: HNHc Note: nucleases Location: 201 9-21 84 bp Feature: gene Location: 2425-3330 bp Feature: domain Description: RVT_N Location: 2482-2728 bp Feature: domain Description: RVT_N Location: 2482-2728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2776-3310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2776-331 0 bp Feature: gene Location: 3961-4515 bp Feature: gene Location: 4557-5084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655), RVT-GII

Seq: LYMA02000010.1 Orientia tsutsugamushi str. Karp Karp_Contig0000010, whole genome shotgun sequence (17646 bp)
Overview 1 RT 1: 8395-14968 bp Neighborhood of RT #1 [8395, 14968] TraD GIIM HNHc RVT_N RVT-GII TraA_Ti Feature: gene Location: 8395-8850 bp Feature: domain Description: TraD Location: 8479-8656 bp Feature: domain Description: TraD Location: 8479-8656 bp Feature: gene Location: 9060-9791 bp Feature: domain Description: GIIM Note: maturase Location: 9144-9378 bp Feature: domain Description: GIIM Note: maturase Location: 9144-9378 bp Feature: domain Description: HNHc Note: nucleases Location: 9567-9732 bp Feature: domain Description: HNHc Note: nucleases Location: 9567-9732 bp Feature: gene Location: 9782-10777 bp Feature: domain Description: RVT_N Location: 9839-10085 bp Feature: domain Description: RVT_N Location: 9839-10085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10133-10769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10133-10769 bp Feature: gene Location: 11477-13594 bp Feature: domain Description: TraA_Ti Location: 11480-13568 bp Feature: domain Description: TraA_Ti Location: 11480-13568 bp Feature: gene Location: 14165-14968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraD (pfam06412), GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655), RVT-GII, TraA_Ti (TIGR02768)

Seq: LYMA02000035.1 Orientia tsutsugamushi str. Karp Karp_Contig0000035, whole genome shotgun sequence (1920 bp)
Overview 1 RT 1: 197-1853 bp Neighborhood of RT #1 [197, 1912] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 197-1432 bp Feature: domain Description: RVT_N Location: 254-500 bp Feature: domain Description: RVT_N Location: 254-500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 548-1193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 548-1193 bp Feature: domain Description: GIIM Note: maturase Location: 1265-1427 bp Feature: domain Description: GIIM Note: maturase Location: 1265-1427 bp Feature: gene Location: 1535-1912 bp Feature: domain Description: HNHc Note: nucleases Location: 1688-1853 bp Feature: domain Description: HNHc Note: nucleases Location: 1688-1853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LYMA02000036.1 Orientia tsutsugamushi str. Karp Karp_Contig0000036, whole genome shotgun sequence (75192 bp)
Overview 1 RT 1: 16405-22345 bp Neighborhood of RT #1 [16405, 22449] ANK RVT-GII DDE_Tnp_1_3 Feature: gene Location: 16405-16566 bp Feature: gene Location: 17023-19233 bp Feature: domain Description: ANK Location: 17140-17515 bp Feature: domain Description: ANK Location: 1714 0-17515 bp Feature: gene Location: 19508-19693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19511-19688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19511-19688 bp Feature: gene Location: 20686-21381 bp Feature: gene Location: 21778-22449 bp Feature: domain Description: DDE_Tnp_1_3 Location: 21886-22345 bp Feature: domain Description: DDE_Tnp_1_3 Location: 21886-2234 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ANK (smart00248), RVT-GII, DDE_Tnp_1_3 (pfam13612)

Seq: LYMA02000039.1 Orientia tsutsugamushi str. Karp Karp_Contig0000039, whole genome shotgun sequence (20873 bp)
Overview 1 RT 1: 5300-9794 bp Neighborhood of RT #1 [5300, 9838] TraC-F-type TraW PRK13737 RVT-GII ANK ANK Feature: gene Location: 5300-5614 bp Feature: domain Description: TraC-F-type Location: 5306-5432 bp Feature: domain Description: TraC-F-type Location: 5 306-5 432 bp Feature: domain Description: TraW Location: 5453-5603 bp Feature: domain Description: TraW Location: 5 45 3-5 603 bp Feature: gene Location: 5983-6474 bp Feature: domain Description: PRK13737 Location: 6001-6466 bp Feature: domain Description: PRK13737 Location: 6001-6466 bp Feature: gene Location: 7104-7430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7164-7428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7164-7428 bp Feature: gene Location: 7591-8673 bp Feature: gene Location: 9152-9838 bp Feature: domain Description: ANK Location: 9194-9431 bp Feature: domain Description: ANK Location: 9194-9431 bp Feature: domain Description: ANK Location: 9563-9794 bp Feature: domain Description: ANK Location: 95 63-9794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), TraW (TIGR02743), PRK13737 (conjugal transfer pilus assembly protein TraU; Provisional), RVT-GII, ANK (smart00248)

Seq: LYMA02000043.1 Orientia tsutsugamushi str. Karp Karp_Contig0000043, whole genome shotgun sequence (51552 bp)
Overview 1 RT 1: 47128-50657 bp Neighborhood of RT #1 [47128, 50657] PRK14341 RVT-GII Feature: gene Location: 47128-47754 bp Feature: domain Description: PRK14341 Location: 47131-47752 bp Feature: domain Description: PRK14341 Location: 47131-47752 bp Feature: gene Location: 48536-48697 bp Feature: gene Location: 48797-49171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48806-49169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48806 -4916 9 bp Feature: gene Location: 49815-50096 bp Feature: gene Location: 50373-50657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14341 (lipoyl(octanoyl) transferase LipB), RVT-GII

Seq: LYMA02000048.1 Orientia tsutsugamushi str. Karp Karp_Contig0000048, whole genome shotgun sequence (98063 bp)
Overview 1 RT 1: 25888-33765 bp Neighborhood of RT #1 [25888, 33815] sucA PRK10543 RVT-GII CorB CcmF Feature: gene Location: 25888-28779 bp Feature: domain Description: sucA Location: 25909-28753 bp Feature: domain Description: sucA Location: 25909-287 53 bp Feature: gene Location: 28820-29461 bp Feature: domain Description: PRK10543 Location: 28862-29444 bp Feature: domain Description: PRK10543 Location: 28862-29444 bp Feature: gene Location: 29561-29800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29609-29783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29609-297 83 bp Feature: gene Location: 30674-31942 bp Feature: domain Description: CorB Location: 30689-31919 bp Feature: domain Description: CorB Location: 30689-31919 bp Feature: gene Location: 31935-33815 bp Feature: domain Description: CcmF Location: 31938-33765 bp Feature: domain Description: CcmF Location: 31938-337 65 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sucA (PRK09404), PRK10543 (superoxide dismutase ), RVT-GII, CorB (COG4536), CcmF (COG1138)

Seq: LYMA02000052.1 Orientia tsutsugamushi str. Karp Karp_Contig0000052, whole genome shotgun sequence (26588 bp)
Overview 1 RT 1: 13533-19394 bp Neighborhood of RT #1 [13533, 19492] TraA_Ti RVT_N RVT_N RVT-GII GIIM HNHc TraD PDDEXK_2 fliH Feature: gene Location: 13533-15332 bp Feature: domain Description: TraA_Ti Location: 13536-15276 bp Feature: domain Description: TraA_Ti Location: 13536-15276 bp Feature: gene Location: 16033-16170 bp Feature: domain Description: RVT_N Location: 16090-16159 bp Feature: domain Description: RVT_N Location: 16090-16159 bp Feature: gene Location: 16172-17749 bp Feature: domain Description: RVT_N Location: 16178-16337 bp Feature: domain Description: RVT_N Location: 16178 -16337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16385-17030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1638 5-17030 bp Feature: domain Description: GIIM Note: maturase Location: 17102-17336 bp Feature: domain Description: GIIM Note: maturase Location: 17102-17336 bp Feature: domain Description: HNHc Note: nucleases Location: 17525-17690 bp Feature: domain Description: HNHc Note: nucleases Location: 17525-17690 bp Feature: gene Location: 17959-18414 bp Feature: domain Description: TraD Location: 18043-18220 bp Feature: domain Description: TraD Location: 18 043-18 220 bp Feature: gene Location: 18482-19492 bp Feature: domain Description: PDDEXK_2 Location: 18509-19199 bp Feature: domain Description: PDDEXK_2 Location: 18 509-19199 bp Feature: domain Description: fliH Location: 19238-19394 bp Feature: domain Description: fliH Location: 19238 -19394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraA_Ti (TIGR02768), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), TraD (pfam06412), PDDEXK_2 (pfam12784), fliH (PRK13386)

Seq: LYMA02000058.1 Orientia tsutsugamushi str. Karp Karp_Contig0000058, whole genome shotgun sequence (80607 bp)
Overview 1 RT 1: 24908-28776 bp Neighborhood of RT #1 [24908, 30059] HTH_Tnp_4 RVT-GII DUF3857 Feature: gene Location: 24908-25084 bp Feature: domain Description: HTH_Tnp_4 Location: 24911-25028 bp Feature: domain Description: HTH_Tnp_4 Location: 249 11-25028 bp Feature: gene Location: 25218-25481 bp Feature: gene Location: 26862-27107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26874-27039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26874-27039 bp Feature: gene Location: 27293-27448 bp Feature: gene Location: 28131-30059 bp Feature: domain Description: DUF3857 Location: 28275-28776 bp Feature: domain Description: DUF3857 Location: 28275-28776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_4 (pfam13613), RVT-GII, DUF3857 (pfam12969)

Seq: LYMA02000073.1 Orientia tsutsugamushi str. Karp Karp_Contig0000073, whole genome shotgun sequence (44515 bp)
Overview 1 RT 1: 15818-20181 bp Neighborhood of RT #1 [15818, 20222] TraD IbpA RVT_N RVT-GII TraA_Ti AAA_30 TraA_Ti Feature: gene Location: 15818-16174 bp Feature: domain Description: TraD Location: 15902-16079 bp Feature: domain Description: TraD Location: 15902-16079 bp Feature: gene Location: 16922-17380 bp Feature: domain Description: IbpA Location: 16979-17375 bp Feature: domain Description: IbpA Location: 16979-17375 bp Feature: gene Location: 17512-18489 bp Feature: domain Description: RVT_N Location: 17569-17815 bp Feature: domain Description: RVT_N Location: 17569-17815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17863-18481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17863-18481 bp Feature: gene Location: 19189-19839 bp Feature: domain Description: TraA_Ti Location: 19192-19333 bp Feature: domain Description: TraA_Ti Location: 19192-19333 bp Feature: domain Description: AAA_30 Location: 19576-19813 bp Feature: domain Description: AAA_30 Location: 19576-19813 bp Feature: gene Location: 19824-20222 bp Feature: domain Description: TraA_Ti Location: 19836-20181 bp Feature: domain Description: TraA_Ti Location: 19836-20181 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraD (pfam06412), IbpA (COG0071), RVT_N (pfam13655), RVT-GII, TraA_Ti (TIGR02768), AAA_30 (pfam13604)

Seq: LYMA02000075.1 Orientia tsutsugamushi str. Karp Karp_Contig0000075, whole genome shotgun sequence (19978 bp)
Overview 1 RT 1: 2-2440 bp 2 RT 2: 4716-7943 bp Neighborhood of RT #1 [2, 2478] RVT_N RVT-GII TraA_Ti AAA_30 Neighborhood of RT #2 [4716, 7943] ANK ANK RVT-GII Feature: gene Location: 2-727 bp Feature: domain Description: RVT_N Location: 59-305 bp Feature: domain Description: RVT_N Location: 59-305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353-725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353-725 bp Feature: gene Location: 1786-2214 bp Feature: domain Description: TraA_Ti Location: 1846-2146 bp Feature: domain Description: TraA_Ti Location: 1846-2146 bp Feature: gene Location: 2236-2478 bp Feature: domain Description: AAA_30 Location: 2248-2440 bp Feature: domain Description: AAA_30 Location: 2248-2440 bp Feature: gene Location: 4716-4886 bp Feature: gene Location: 4904-5767 bp Feature: domain Description: ANK Location: 4913-5231 bp Feature: domain Description: ANK Location: 4913-5231 bp Feature: domain Description: ANK Location: 5276-5588 bp Feature: domain Description: ANK Location: 5276-5588 bp Feature: gene Location: 6125-6343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6131-6290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6131-6290 bp Feature: gene Location: 6431-6688 bp Feature: gene Location: 7689-7943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, TraA_Ti (TIGR02768), AAA_30 (pfam13604), ANK (smart00248)

Seq: LYMA02000081.1 Orientia tsutsugamushi str. Karp Karp_Contig0000081, whole genome shotgun sequence (6723 bp)
Overview 1 RT 1: 2531-6706 bp Neighborhood of RT #1 [2531, 6720] TraA_Ti Toprim_3 TraA_Ti RVT_N RVT-GII Feature: gene Location: 2531-4306 bp Feature: domain Description: TraA_Ti Location: 2549-3656 bp Feature: domain Description: TraA_Ti Location: 2549-3656 bp Feature: domain Description: Toprim_3 Location: 3965-4184 bp Feature: domain Description: Toprim_3 Location: 3965-4184 bp Feature: gene Location: 4348-5370 bp Feature: domain Description: TraA_Ti Location: 4351-5320 bp Feature: domain Description: TraA_Ti Location: 4351-5320 bp Feature: gene Location: 6070-6720 bp Feature: domain Description: RVT_N Location: 6127-6373 bp Feature: domain Description: RVT_N Location: 612 7-6373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6421-6706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6421-6706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraA_Ti (TIGR02768), Toprim_3 (pfam13362), RVT_N (pfam13655), RVT-GII

Seq: LYMA02000082.1 Orientia tsutsugamushi str. Karp Karp_Contig0000082, whole genome shotgun sequence (10140 bp)
Overview 1 RT 1: 2224-6041 bp Neighborhood of RT #1 [2224, 6097] Arm-DNA-bind_3 INT_Rci_Hp1_C RVT-GII TraD_Ftype Feature: gene Location: 2224-2520 bp Feature: gene Location: 2680-3879 bp Feature: domain Description: Arm-DNA-bind_3 Location: 2710-2974 bp Feature: domain Description: Arm-DNA-bind_3 Location: 2710-2974 bp Feature: domain Description: INT_Rci_Hp1_C Location: 3319-3799 bp Feature: domain Description: INT_Rci_Hp1_C Location: 3319-3799 bp Feature: gene Location: 4368-4634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4491-4629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4491-4629 bp Feature: gene Location: 5046-5183 bp Feature: gene Location: 5888-6097 bp Feature: domain Description: TraD_Ftype Location: 5891-6041 bp Feature: domain Description: TraD_Ftype Location: 5891-6041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), INT_Rci_Hp1_C (cd00796), RVT-GII, TraD_Ftype (TIGR02759)

Seq: LYMA02000091.1 Orientia tsutsugamushi str. Karp Karp_Contig0000091, whole genome shotgun sequence (12354 bp)
Overview 1 RT 1: 4986-8207 bp Neighborhood of RT #1 [4986, 8209] HTH_Tnp_IS630 MidA RVT-GII Feature: gene Location: 4986-5375 bp Feature: domain Description: HTH_Tnp_IS630 Location: 4998-5349 bp Feature: domain Description: HTH_Tnp_IS630 Location: 4998-5349 bp Feature: gene Location: 6347-7495 bp Feature: domain Description: MidA Location: 6350-7439 bp Feature: domain Description: MidA Location: 6350-7439 bp Feature: gene Location: 8021-8209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8069-8207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8069-8207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_IS630 (pfam01710), MidA (COG1565), RVT-GII