myRT

myRT report for GCA_001655005.1_Hpa29927_DRAFTv1

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Seq: LXET01000044.1 Hafnia paralvei ATCC 29927 Sequence00044, whole genome shotgun sequence (377020 bp)
Overview 1 RT 1: 20131-26473 bp Neighborhood of RT #1 [20131, 26487] PRK09978 CybB RVT-Retrons umuC Feature: gene Location: 20131-20877 bp Ori: OAT40201.1 Feature: domain Description: PRK09978 Location: 20167-20866 bp Feature: domain Description: PRK09978 Location: 201 67-20866 bp Feature: gene Location: 21317-21682 bp Ori: OAT40202.1 Feature: domain Description: CybB Location: 21320-21674 bp Feature: domain Description: CybB Location: 21 320-21 674 bp Feature: gene Location: 22393-23544 bp Ori: OAT40203.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22636-23275 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22636-23275 bp Feature: gene Location: 23748-25064 bp Feature: gene Location: 25219-26487 bp Ori: OAT40205.1 Feature: domain Description: umuC Location: 25222-26473 bp Feature: domain Description: umuC Location: 25222-26473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09978 (DNA-binding transcriptional regulator GadX; Provisional), CybB (COG3038), RVT-Retrons, umuC (PRK03609)

Seq: LXET01000041.1 Hafnia paralvei ATCC 29927 Sequence00041, whole genome shotgun sequence (264492 bp)
Overview 1 RT 1: 180752-183109 bp Neighborhood of RT #1 [180752, 183129] HTH_XRE RVT-Retrons 5-nucleotidase 5-nucleotidase Feature: gene Location: 180752-180904 bp Feature: gene Location: 180936-181259 bp Ori: OAT41092.1 Feature: domain Description: HTH_XRE Location: 180951-181113 bp Feature: domain Description: HTH_XRE Location: 180951-181113 bp Feature: gene Location: 181228-182151 bp Ori: OAT41093.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 181411-181930 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 181411-181930 bp Feature: gene Location: 182189-182413 bp Ori: OAT41094.1 Feature: domain Description: 5-nucleotidase Location: 182303-182387 bp Feature: domain Description: 5-nucleotidase Location: 182 303-182 387 bp Feature: gene Location: 182455-183129 bp Ori: OAT41095.1 Feature: domain Description: 5-nucleotidase Location: 182458-183109 bp Feature: domain Description: 5-nucleotidase Location: 182 458-183109 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, 5-nucleotidase (pfam06189)

Seq: LXET01000056.1 Hafnia paralvei ATCC 29927 Sequence00056, whole genome shotgun sequence (4702 bp)
Overview 1 RT 1: 389-3602 bp Neighborhood of RT #1 [389, 3631] RVT-DGRs PHA02517 Feature: gene Location: 389-634 bp Feature: gene Location: 729-1223 bp Feature: gene Location: 1628-2902 bp Ori: OAT38048.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1817-2513 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1817-2513 bp Feature: gene Location: 2991-3221 bp Feature: gene Location: 3191-3631 bp Ori: OAT38050.1 Feature: domain Description: PHA02517 Location: 3194-3602 bp Feature: domain Description: PHA02517 Location: 3 194-3 602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, PHA02517 (putative transposase OrfB; Reviewed)