myRT

myRT report for GCA_001655035.1_Opr12841_DRAFTv1

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Seq: LXEX01000068.1 Obesumbacterium proteus ATCC 12841 Sequence00068, whole genome shotgun sequence (53843 bp)
Overview 1 RT 1: 34165-36389 bp Neighborhood of RT #1 [34165, 36556] HTH_XRE RVT-Retrons ParE HXXEE Feature: gene Location: 34165-34323 bp Feature: gene Location: 34356-34673 bp Feature: domain Description: HTH_XRE Location: 34371-34533 bp Feature: domain Description: HTH_XRE Location: 34371 -34533 bp Feature: gene Location: 34648-35583 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34834-35356 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34834-35356 bp Feature: gene Location: 35646-35789 bp Feature: domain Description: ParE Location: 35649-35784 bp Feature: domain Description: ParE Location: 35649-35784 bp Feature: gene Location: 35951-36556 bp Feature: domain Description: HXXEE Location: 36071-36389 bp Feature: domain Description: HXXEE Location: 36071 -36389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, ParE (COG3668), HXXEE (pfam13787)

Seq: LXEX01000044.1 Obesumbacterium proteus ATCC 12841 Sequence00044, whole genome shotgun sequence (200353 bp)
Overview 1 RT 1: 87183-93894 bp Neighborhood of RT #1 [87183, 93899] SR_ResInv Ser_Recombinase Recombinase Zn_ribbon_recom RVT-Retrons AAA_15 PRK10550 Feature: gene Location: 87183-87824 bp Feature: domain Description: SR_ResInv Location: 87192-87585 bp Feature: domain Description: SR_ResInv Location: 87192 -87585 bp Feature: gene Location: 88000-89541 bp Feature: domain Description: Ser_Recombinase Location: 88015-88465 bp Feature: domain Description: Ser_Recombinase Location: 88015-88465 bp Feature: domain Description: Recombinase Location: 88561-88831 bp Feature: domain Description: Recombinase Location: 88561-88831 bp Feature: domain Description: Zn_ribbon_recom Location: 88882-89053 bp Feature: domain Description: Zn_ribbon_recom Location: 88882 -89053 bp Feature: gene Location: 89591-90739 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 89744-90317 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 89744-90317 bp Feature: gene Location: 90900-93128 bp Feature: domain Description: AAA_15 Location: 90903-91911 bp Feature: domain Description: AAA_15 Location: 90903-91911 bp Feature: gene Location: 93270-93899 bp Feature: domain Description: PRK10550 Location: 93273-93894 bp Feature: domain Description: PRK10550 Location: 932 73-93894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_ResInv (cd03768), Ser_Recombinase (cl02788), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-Retrons, AAA_15 (pfam13175), PRK10550 (tRNA dihydrouridine(16) synthase DusC)

Seq: LXEX01000002.1 Obesumbacterium proteus ATCC 12841 Sequence00002, whole genome shotgun sequence (21762 bp)
Overview 1 RT 1: 17461-21703 bp Neighborhood of RT #1 [17461, 21735] DDE_Tnp_IS66_C PHA02517 RVT-GII GIIM PHA02517 UvrA Feature: gene Location: 17461-18111 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 18031-18106 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1803 1-18106 bp Feature: gene Location: 18275-18691 bp Feature: domain Description: PHA02517 Location: 18278-18671 bp Feature: domain Description: PHA02517 Location: 18278-18671 bp Feature: gene Location: 18844-20367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19117-19849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19117-19849 bp Feature: domain Description: GIIM Note: maturase Location: 19924-20122 bp Feature: domain Description: GIIM Note: maturase Location: 19924-20122 bp Feature: gene Location: 21030-21293 bp Feature: domain Description: PHA02517 Location: 21033-21282 bp Feature: domain Description: PHA02517 Location: 2103 3 -21282 bp Feature: gene Location: 21310-21735 bp Feature: domain Description: UvrA Location: 21361-21703 bp Feature: domain Description: UvrA Location: 213 61-21703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), UvrA (COG0178)