myRT

myRT report for GCA_001655635.1_ASM165563v1

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Seq: LSNH01000001.1 Photobacterium sp. J15 contig1, whole genome shotgun sequence (3750962 bp)
Overview 1 RT 1: 210279-216569 bp Neighborhood of RT #1 [210279, 216571] COG5545 RVT-Retrons Trypsin_2 fis PRK10415 Feature: gene Location: 210279-210692 bp Feature: gene Location: 210832-212439 bp Feature: domain Description: COG5545 Location: 211456-212257 bp Feature: domain Description: COG5545 Location: 21 1 456-21 2257 bp Feature: gene Location: 212609-214288 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 212783-213386 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 2783-21 3386 bp Feature: domain Description: Trypsin_2 Location: 213773-214193 bp Feature: domain Description: Trypsin_2 Location: 21 3773-21 41 93 bp Feature: gene Location: 215242-215538 bp Feature: domain Description: fis Location: 215257-215536 bp Feature: domain Description: fis Location: 21 5257-21 5536 bp Feature: gene Location: 215561-216571 bp Feature: domain Description: PRK10415 Location: 215609-216569 bp Feature: domain Description: PRK1 041 5 Location: 21 5609-21 6569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5545 (Predicted P-loop ATPase and inactivated derivatives ), RVT-Retrons, Trypsin_2 (pfam13365), fis (PRK00430), PRK10415 (tRNA-dihydrouridine synthase B; Provisional)

Seq: LSNH01000003.1 Photobacterium sp. J15 contig3, whole genome shotgun sequence (124416 bp)
Overview 1 RT 1: 1220-7989 bp Neighborhood of RT #1 [1220, 8588] KOG1803 DNA2 PLDc_yjhR_C_like RVT_N RVT-GII GIIM sopB_N Feature: gene Location: 1220-4855 bp Feature: domain Description: KOG1803 Location: 2120-2354 bp Feature: domain Description: KOG1803 Location: 2 12 0-2 354 bp Feature: domain Description: DNA2 Location: 3353-4250 bp Feature: domain Description: DNA2 Location: 3353-42 50 bp Feature: domain Description: PLDc_yjhR_C_like Location: 4385-4823 bp Feature: domain Description: PLDc_yjhR_C_like Location: 4385-482 3 bp Feature: gene Location: 5153-5347 bp Feature: gene Location: 5379-6845 bp Feature: RT Description: RVT_N Location: 5586-5829 bp Feature: RT Description: RVT_N Location: 5586-582 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5874-6501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5874-6501 bp Feature: domain Description: GIIM Note: maturase Location: 6561-6786 bp Feature: domain Description: GIIM Note: maturase Location: 6561-6786 bp Feature: gene Location: 6881-7030 bp Feature: gene Location: 7614-8588 bp Feature: domain Description: sopB_N Location: 7788-7989 bp Feature: domain Description: sopB_N Location: 7788-7989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1803 (KOG1803, DNA helicase ), DNA2 (COG1112), PLDc_yjhR_C_like (cd09118), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), sopB_N (cd16394)