myRT

myRT report for GCA_001657435.1_ASM165743v1

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Seq: AYXL01000182.1 Clostridium saccharobutylicum DSM 13864 contig_182, whole genome shotgun sequence (108242 bp)
Overview 1 RT 1: 28779-36171 bp Neighborhood of RT #1 [28779, 36671] Enpp RVT-Retrons RVT-Retrons UvrD UvrD Feature: gene Location: 28779-29315 bp Feature: gene Location: 29886-31190 bp Feature: domain Description: Enpp Location: 29904-31140 bp Feature: domain Description: Enpp Location: 29904-31 1 40 bp Feature: gene Location: 31492-31992 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31708-31963 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 708-31 963 bp Feature: gene Location: 31943-32599 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31964-32249 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 964-32249 bp Feature: gene Location: 32811-33818 bp Feature: gene Location: 34104-36671 bp Feature: domain Description: UvrD Location: 34626-35754 bp Feature: domain Description: UvrD Location: 34626-35754 bp Feature: domain Description: UvrD Location: 35931-36171 bp Feature: domain Description: UvrD Location: 35931 -361 71 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Enpp (cd16018), RVT-Retrons, UvrD (COG0210)

Seq: AYXL01000040.1 Clostridium saccharobutylicum DSM 13864 contig_40, whole genome shotgun sequence (25362 bp)
Overview 1 RT 1: 21592-23985 bp Neighborhood of RT #1 [21592, 23993] plantaricin RVT_N RVT-GII GIIM rve_2 Feature: gene Location: 21592-21681 bp Feature: gene Location: 22118-22384 bp Feature: domain Description: plantaricin Location: 22139-22382 bp Feature: domain Description: plantaricin Location: 2 2 139-2 2 382 bp Feature: gene Location: 22458-23993 bp Feature: RT Description: RVT_N Location: 22530-22773 bp Feature: RT Description: RVT_N Location: 2 2 530-2 2 773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22818-23478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 818-2 3478 bp Feature: domain Description: GIIM Note: maturase Location: 23529-23766 bp Feature: domain Description: GIIM Note: maturase Location: 2 352 9-2 3766 bp Feature: domain Description: rve_2 Location: 23910-23985 bp Feature: domain Description: rve_2 Location: 2 3910-2 3985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT plantaricin (NF000539), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333)

Seq: AYXL01000257.1 Clostridium saccharobutylicum DSM 13864 contig_257, whole genome shotgun sequence (68994 bp)
Overview 1 RT 1: 6808-15526 bp Neighborhood of RT #1 [6808, 15526] Sig70_famx3 DUF1835 DUF3658 RVT-Retrons Feature: gene Location: 6808-7335 bp Feature: domain Description: Sig70_famx3 Location: 6814-7297 bp Feature: domain Description: Sig70_famx3 Location: 6814-7297 bp Feature: gene Location: 7554-8579 bp Feature: domain Description: DUF1835 Location: 7569-7938 bp Feature: domain Description: DUF183 5 Location: 7569-793 8 bp Feature: domain Description: DUF3658 Location: 8028-8340 bp Feature: domain Description: DUF3 658 Location: 8028-83 40 bp Feature: gene Location: 9167-10672 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9803-10445 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9803 -10445 bp Feature: gene Location: 10669-12477 bp Feature: gene Location: 12479-15526 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Sig70_famx3 (TIGR02954), DUF1835 (pfam08874), DUF3658 (pfam12395), RVT-Retrons

Seq: AYXL01000043.1 Clostridium saccharobutylicum DSM 13864 contig_43, whole genome shotgun sequence (9476 bp)
Overview 1 RT 1: 2866-6840 bp Neighborhood of RT #1 [2866, 6840] DDE_Tnp_1 RVT-GII RVT-GII Feature: gene Location: 2866-3072 bp Feature: domain Description: DDE_Tnp_1 Location: 2896-3034 bp Feature: domain Description: DDE_Tnp_1 Location: 2896-3034 bp Feature: gene Location: 3164-3514 bp Feature: gene Location: 3985-4623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4321-4504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 321-4 504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4507-4612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 507-4 612 bp Feature: gene Location: 5057-5464 bp Feature: gene Location: 6658-6840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII