myRT

myRT report for GCA_001657495.1_ASM165749v1

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Seq: LYWI01000007.1 Lactobacillus reuteri strain CRL 1098 Contig_15, whole genome shotgun sequence (34061 bp)
Overview 1 RT 1: 1014-6989 bp Neighborhood of RT #1 [1014, 7009] PRK02363 pyrG RVT-GII GIIM PRK10703 PBP1_GalR Feature: gene Location: 1014-1583 bp Feature: domain Description: PRK02363 Location: 1062-1578 bp Feature: domain Description: PRK02363 Location: 1 062-1 578 bp Feature: gene Location: 1759-3363 bp Feature: domain Description: pyrG Location: 1762-3358 bp Feature: domain Description: pyrG Location: 1 762-3358 bp Feature: gene Location: 3876-5258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4194-4812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 94-481 2 bp Feature: domain Description: GIIM Note: maturase Location: 4866-5094 bp Feature: domain Description: GIIM Note: maturase Location: 4866-5094 bp Feature: gene Location: 5342-5821 bp Feature: gene Location: 5990-7009 bp Feature: domain Description: PRK10703 Location: 5993-6131 bp Feature: domain Description: PRK1 0703 Location: 5993-61 31 bp Feature: domain Description: PBP1_GalR Location: 6182-6989 bp Feature: domain Description: PBP1 _GalR Location: 61 82-6989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK02363 (DNA-directed RNA polymerase subunit delta; Reviewed), pyrG (PRK05380), RVT-GII, GIIM (pfam08388), PRK10703 (HTH-type transcriptional repressor PurR), PBP1_GalR (cd01544)

Seq: LYWI01000045.1 Lactobacillus reuteri strain CRL 1098 Contig_9, whole genome shotgun sequence (229710 bp)
Overview 1 RT 1: 199007-207983 bp Neighborhood of RT #1 [199007, 207983] KxYKxGKxW COG5263 COG5263 COG5263 glucan_65_rpt Glyco_hydro_70 COG5263 Spr RVT-GII GIIM RAYT Feature: gene Location: 199007-203473 bp Feature: domain Description: KxYKxGKxW Location: 199019-199082 bp Feature: domain Description: KxYKxGKxW Location: 199019-199082 bp Feature: domain Description: COG5263 Location: 199166-199757 bp Feature: domain Description: COG52 63 Location: 199166-199757 bp Feature: domain Description: COG5263 Location: 199796-200150 bp Feature: domain Description: COG52 63 Location: 199796-2 00150 bp Feature: domain Description: COG5263 Location: 200171-200603 bp Feature: domain Description: COG52 63 Location: 2 00171-2 00603 bp Feature: domain Description: glucan_65_rpt Location: 200711-200792 bp Feature: domain Description: glucan_65_rpt Location: 2 00711-2 00792 bp Feature: domain Description: Glyco_hydro_70 Location: 201035-203405 bp Feature: domain Description: Glyco_hydro_70 Location: 2 01035-2 03405 bp Feature: gene Location: 203629-204510 bp Feature: domain Description: COG5263 Location: 203755-204154 bp Feature: domain Description: COG52 63 Location: 2 03755-2 04154 bp Feature: domain Description: Spr Location: 204181-204472 bp Feature: domain Description: Spr Location: 2 04181-2 04472 bp Feature: gene Location: 204661-206034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204979-205597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 04979-2 05597 bp Feature: domain Description: GIIM Note: maturase Location: 205651-205879 bp Feature: domain Description: GIIM Note: maturase Location: 2 05651-2 05879 bp Feature: gene Location: 206686-207144 bp Feature: domain Description: RAYT Location: 206704-207085 bp Feature: domain Description: RAYT Location: 2 06704-2 07085 bp Feature: gene Location: 207804-207983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KxYKxGKxW (TIGR03715), COG5263 (Glucan-binding domain (YG repeat) ), glucan_65_rpt (TIGR04035), Glyco_hydro_70 (pfam02324), Spr (COG0791), RVT-GII, GIIM (pfam08388), RAYT (COG1943)

Seq: LYWI01000042.1 Lactobacillus reuteri strain CRL 1098 Contig_6, whole genome shotgun sequence (162070 bp)
Overview 1 RT 1: 2395-10897 bp Neighborhood of RT #1 [2395, 10944] hsdR HsdR nicotinamidase_related RVT-GII GIIM GT4_GtfA-like Tas Feature: gene Location: 2395-5730 bp Feature: domain Description: hsdR Location: 2410-2761 bp Feature: domain Description: hsdR Location: 2410-2761 bp Feature: domain Description: HsdR Location: 2983-5644 bp Feature: domain Description: HsdR Location: 2983 -5644 bp Feature: gene Location: 5956-6450 bp Feature: domain Description: nicotinamidase_related Location: 5971-6409 bp Feature: domain Description: nicotinamidase_related Location: 5971-6409 bp Feature: gene Location: 6973-8355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7291-7909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7291-7909 bp Feature: domain Description: GIIM Note: maturase Location: 7963-8191 bp Feature: domain Description: GIIM Note: maturase Location: 7963 -8191 bp Feature: gene Location: 8420-9922 bp Feature: domain Description: GT4_GtfA-like Location: 8429-9890 bp Feature: domain Description: GT4_GtfA-like Location: 8429-9890 bp Feature: gene Location: 9961-10944 bp Feature: domain Description: Tas Location: 9976-10897 bp Feature: domain Description: Tas Location: 9976-10897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT hsdR (TIGR00348), HsdR (COG4096), nicotinamidase_related (cd01014), RVT-GII, GIIM (pfam08388), GT4_GtfA-like (cd04949), Tas (COG0667)